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GT24439

CSHL Arabidopsis genetrap mutant lines

Original: GT24439

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24439

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410688 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -433; Region: promoter
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -800; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: intron1 (CDS)
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT24439 - 5-prime edge 
    ATGTCCCTGG GCTGAACTCT TCTGGAGTCC TATATTCATC ATCCCCATTA 
    CATCAAGATC CTAATGATGC TATGTTGATG ATTGAAATAG TCAAAAGAGA 
    AAGGTGGGGC GTTACCTGAC GTCTAGATAG CGGTGGCCGG CTAGAAGAAG 
    GTCGTGGGCG ACTGTTACCG ACACCGATGA TGGGACTCTG CTCTCGTCCG 
    CCATTTTTTT CAATGGCTTA TTATTATATT TGACTGGACA AAGACTTCAA 
    TAATTTCATT TTATATAAAT TAGTTGGGAA AGTGATTATA ATTGGGCCAT 
    ATATTACAAA TACATAATGG GCCTAAGTTG CTGCTTTATG GGCTAAGCTG 
    TTTTCGGACT GTCCTTCATA TTTTCATATT ACCATTCCAA AACGGCATCA 
    TTTTAGCTAA CCTCGTCTTG GGTTTACTTG ATGAATTTTC AAAAGGTTTA 
    AGGTTTTACA TGCAATACTA AAATAGTTGA GGCTTCTGAA TGCAATTATT 
    CATTAGTAAA ACACCCTTTA CACAATTCTT ACCATTCTTC GTCAGTCGAT 
    CAAATCAACG TTTTACCGTC TCACTGATCG ACGGGAAAAA GACAACAACT 
    TTTTTAACCT TTGGGTTGAA ATCCGATCCA ATATTT

AT5G66030.1

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), GRIP (InterPro:IPR000237); Has 226787 Blast hits to 107130 proteins in 3750 species: Archae - 2735; Bacteria - 54789; Metazoa - 91225; Fungi - 18234; Plants - 12767; Viruses - 906; Other Eukaryotes - 46131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66030.2

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); Has 226693 Blast hits to 107013 proteins in 3750 species: Archae - 2739; Bacteria - 54726; Metazoa - 91166; Fungi - 18242; Plants - 12768; Viruses - 908; Other Eukaryotes - 46144 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.1

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.2

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 254 Blast hits to 254 proteins in 60 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR