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GT24452

CSHL Arabidopsis genetrap mutant lines

Original: GT24452

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24452

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374285 [Map]; Strand: w
      • AT5G10680.1 - [+] show detail - calmodulin-binding protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24452 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTGTTGG AGATTCCTTC 
    TTCCCTTGCA CCCCTTCCTT CTTTGTTCCT TCCTCTGGTA ATTCTTCTAT
    TTGAGCCTTT GTTTCGGCTG TTTCTTCTTT CACTCTGCTG CTTTCGCTCT
    CTTCCTCTTT AACTTCTGCT TCTTCCTGTT CCTCTTGTTT ACTTTTTTCG
    AAATTCACAG CTTCATTCAT ATCTGTAGTA GTAGCAACTG TCTCGCTATT
    TTCCTCATCA TCAACTTTCT TGCTATCAAA CTCCTCATAG ATCTCAATCT
    TCTTGCTATC GACCAACACT TCTCGTCTCT TCTGCCTAAA CCCGCGGAAC
    AAATCACTCG TCTCATCCAA AACCGAAACA TACTCAGGCT GGTGGCTCTC
    AAACTTATAC TCCTCAATGA TCTTCAACTC TTTTGCCTCA GCTTCTTCTC
    TCTGTCTATC GAGATTCTTA AGCTCTTCTC TTAATAGCCA AACCGCGTTG
    TTTTGCATAT ACTCCCATTG TTTCACGAGG TTGGTTAGTT GAGAGGAGCC
    TTGCTGAGTC AAACTCAATA GTTCTGGTAA CCGTGTCAAA TCTGCAATGG
    TCGGTTTCTC TTCGATTGTG ACTTCTTTCA ACATGCCTCG ACAAGGCAAT
    CTATGTGTGG CAGTGGATAA CTGTCTTTAG GGCAAGCCCT GTTTAGGTCG
    GTGTAATCCA CGCAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2978203 [Map]; Strand: c
      • AT5G09590.1 - [+] show detail - mitochondrial HSO70 2
        Distance: 0; Region: exon6 (CDS)
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: -739; Region: promoter
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: -941; Region: promoter
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: -941; Region: promoter
    Flanking Genome Sequence: GT24452 - 5-prime edge
    TGCAAGAGAA CTCGAAGAAG AACAAGGTTA GGGAACAACG CTTTGTTTCT 
    TGTTCATTTT CTTTCTGACA AAAGTGAATA TATTGAAAGA ACTAAATCTG
    TATCAGTAGC AACTCATTTG GAATTGATGG TGCTCGTCTT GGAAGGCGCA
    ACACTCAGAG GATCGGATTG TGATCTGTTG TACTTTACCA GTCGTCTTGT
    CCTTGGCGGA AACAGTGACA ATGCCATTGG CATCAATGTC AAATGTCACT
    TCGATCTGAG GGACTCCTCT TGGAGATGGT GGAATGCCAA CTAGATCAAA
    TTCTCCCAAG AGCTTGTTGT CTGTTGCCAT TTCACGCTCA CCTTGAAGCA
    CCCTGATCCC AACTTGAGTC TGATTATCGG CTGCAGTTGA GAACACCTTC
    AAGAGAATGA AACGAGACAA TCAACATTTT AGTAAAAACT TGACAAAAAC
    AATGGTAGCT TTGGATGGCT CATAAATTAG TATATATCAC AGGAATGTGC
    TTTCATGACC CCTGTTAAAG AAAAACCAGA GAGATCTCGA GCGTACAAAG
    AGAATCGAAG AGATTGTGAT TGCAAAAGTG TTACTTATAT AGAGAAGAGG
    AGATTCTGTG TTCGTAGTTG GAATAGGAAT CCCAGGAGTT

AT5G09590.1

Model type
Protein coding
Short Description
mitochondrial HSO70 2
Curator Summary
heat shock protein 70 (Hsc70-5); nuclear
Computational Description
mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR

AT5G10680.1

Model type
Protein coding
Short Description
calmodulin-binding protein-related
Computational Description
calmodulin-binding protein-related; BEST Arabidopsis thaliana protein match is: histidine kinase 5 (TAIR:AT5G10720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR