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Mutant Lines
GT24458

GT24458

CSHL Arabidopsis genetrap mutant lines

Original: GT24458

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24458

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 1956638 [Map]; Strand: c
- AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: -241; Region: promoter
- AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon2 (3UTR)

ACCGACCGTT ACCGACCGTT TTCATCCCTA CTTGCAGAGA GAGAGAGAGA 
GAGATACACA CACAAACCGC ACTCCTCCTG CCGGAAGATT CTCCCTCTCT 
TTTGTAGCAA CAGTGCGATC CATAAGCTTT TGCCTCTCTT GTTCCAAGAA 
ATAGATCTTA TCATTCATAC CTTCTTTTTC ATCTCACTCG AAAAAGATCT 
CAAACGTTCT TGAATCGCAC ACGCATTGTC TCTCCCTCTC TCTTATGTAC 
ACTCTTTCCC TCTCTCTCAA AAAATCTGCT TTAGCACACG CTGATATCAC 
CGCGTTGAAA AAGGCAATAT TCTCGGGTAT CTCAAACTTA GCACCCAACT 
GAACACTACT TATCCCCTTG TGAAAAAGAC CGGCTTTGGC ATATCCTTTT 
AAGAGACAGC AAAAGGTCTT TGTGTCTGCT TTCATCCCCC CCCCACACAT 
CTGAACAAAT GTCCCCTCCG TGTTCTTTGC CCCACCAACC TCCGCAAACC 
CCTCAAAGAT TTTGTTGTAG G

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 1956552 [Map]; Strand: c
  - AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: -155; Region: promoter
  - AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: GT24458 - 5-prime edge
```
GTCTGCAGGA GAGATCGATG TCTCACTTGA AAGAGTAGAA TAAAAGAGTT 
TGTAATACAC TTGATTGTTC TTGCAGCTAT GCGTGTTATA TATTTTGATG 
GGCCCAAAAT TATGAATAGA GGCCCATAGA TAAACTGTGA CGTGCACAAG 
AAATCGGACA AGTCCAAAAA GTGGATAAGT GCGTGTCGTC TTTCTATAAA 
TAATCTCTTT TCTCTCATCT TTTACCGTTT CATCTCACTC GA
```

AT3G06420.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06430.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR