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GT24459

CSHL Arabidopsis genetrap mutant lines

Original: GT24459

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24459

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23443860 [Map]; Strand: c
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -343; Region: promoter
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -343; Region: promoter
    Flanking Genome Sequence: GT24459 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTAGT CTACAGTGAA ACACCCAAAA 
    TGAGTCAGCA GAAGATGAAT GAAATTGGGG AAATAGTAGC ACAGGAAATT 
    TGAAGCTGAG AGAAAAGGAA TCGGAACTTA CCTCTCAAAT GGAGTGGAGA 
    GTCAGAGTAG GGTTTCTCTT ACGGGCGGGA AAGAAGAAAC TCGAAATCTG 
    ATTTTTGAGA AAAGAGAAGG AAGAAGAAGA AGGAGAAGGA GAAGAGGTCA 
    GGAGGATACG CGTGTGGGTT GTTAAAAGAT CTAATGGTCC ATAAGAAGAC 
    ACGTGTCACT AGGAACACGG TAGCTAAGGT GCCCGCCACG CAAAGAATAA 
    TAGCTCAAAA AGAATAGGGG GTGTTGTTAT CCCCTTGGGC GTGGAGTGGA 
    TTAGGGAGAC TCGCACTCTT CTTCTTCTTC TTTGTCCCCA GAAAGAAAGA 
    GAGCTCCAAC AATGGCTGCT TGCGCTACTC CCTCCTCTCT CATGCTAGCA 
    TACGCCGCCG CATCCACTCG TGCCCAGGAC CTTACCCCTA CTCCATCTTT 
    TTTCTCTTTT GCCAGCTCCA GACCCAACCA CTTGGGCGTC CCGCTTCTTC 
    TCCTTGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23443770 [Map]; Strand: c
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -433; Region: promoter
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -433; Region: promoter
    Flanking Genome Sequence: GT24459 - 5-prime edge 
    GTAGACTGAG CTCGTTCCGA TAAGGAGAGG AGATGTCTAA CGTAACCGTC 
    TGTGCGCGAT TCAGGCCGCG AAGCTCTAAA GAGATGCGCG ATCCCAGCAG 
    AGATGGTGTC TGTGCTCGAC CCATCGACGC TGAAACCTTC GTTTTCCAAG 
    TTTGTCTACT CGACGCCGTG TGCTTGATTA ATATTGTCTC TCTCTCTTTG 
    TCTCTCAAAC TCTATATAGC GTTTTTACTT GCGTGTAGGA TGACAAGGAA 
    GATGAATTTA CATTTAGCCT CGATAGAGTT TTTTATGAGG ACTCTACCCA 
    AGCTGCGGTT TATGAGTTTC TGGCTCTCCC CATCATGAGA GGTACTAATT 
    GATTCCTTGA TCTTCTCTTT TGGATTTTAG ATCTAAACAT TTGAGCACCA 
    ATCTTATGAT TTTACAATGT AATCAACATT TTTGGTTTTG GTTTCCTCCT 
    ACCTTTGTCT TTTGCATCTT TTACCTTTGT ACTACTACAA CTACTTTCAG 
    ACGCTGTAAA TGGTATAAAC GGAACAATCA TCACTTATGG ACGGGTTTGT 
    T

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR