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GT24465

CSHL Arabidopsis genetrap mutant lines

Original: GT24465

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24465

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662429 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: -388; Region: promoter
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: -415; Region: promoter
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: -415; Region: promoter
    Flanking Genome Sequence: GT24465 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA ATCACCATAT CCCAATTCTC 
    ATCGAATTCA ATAGATCCCC TCTCTAGCTC CGACCTCAAT TTCTTCCAAA 
    AGGCCAACGA AATCAGCCCG CCGGAGACTA AAACGGAGGA TAAAAATTTC 
    CAATTCTCAC GAATTCTAGC AAGTTCCCGA AAAGGTAGCT GTTGAAGATG 
    TGTGTGAATT TGAAGGTGGA TTGCAAATTT GAGAGAATTG GAAACTGGAA 
    ATCCAAATCC ACAAGCAAAA ATCAAAGAAA GATCTTTTCT TCTCGCAATA 
    ATCATCATTT TAATAAATTA TATTTAGCGC CGAGAAATGG CTAAACCAAT 
    CAAACCGTCG TGGGCTCGAG ATTCAATTAT TGATTGCTGG CTTTTAATTT 
    GGAATACCGG AGTTCGGTTG AGAATTGGAC CGGTTCAATA AAGCCAACAA 
    GTTTCTTCTT CCTTATCGCG ATTATGGGAG GAGAGAATGA GTTGGTCTCT 
    CTGCAGCACC CATGGGGTCT CCTCTTCCAT AGCTCTCACT TATGGCTTTC 
    GCCATAGAAA AAGATCCACC TTCCGTATTT TCGCCACCTC TGACGGATTA 
    AAACCCAAGG ACGACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662332 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: -485; Region: promoter
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: -512; Region: promoter
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: -512; Region: promoter
    Flanking Genome Sequence: GT24465 - 5-prime edge 
    GTTAGACAAA GTTTCCAATG GCGAGTTTTT TGGTGGGCTT CTTGTTGCCT 
    TCGCTTCTTC TGGCAGGTTG GTTTCTTTCT CTATCTTCTT GCTTGCAATA 
    ATAAAAAAAA AAAAACCTTT TTTTTTTTTT CCCTTTTAAA CAAAAAAACC 
    CCCCCTTTTT TTCCCGGGGA AATTTTGGGT TTCCCCCTTT TTCCCCTTAA 
    AATTTTCCCC CCCCTTTTAA GGGTCCTTTT TTAAATTTTT AAAATTTAAA 
    ACCCCCCGGG TTTTTTTTTT CAAAAAATTG GAAACAAACC CCTTGGTTTT 
    GGCTTCCCCC TTCCCCCCCC CCCCCAAATT TGGTTTTTTT TCCCTTGGGC 
    TTTTTTTTTC CCAAAAATTT TTTTCCTTCC CCCCCCCCCC CCCTTTTTAA 
    CGGGGGGGGC CAACCCCTTT TTGATTTTAA ACCTTTCCCC CCCCCCCCCC 
    AAATTGCCCC CAAAATTGGA AAACCCTTTT TCCCCCCAAA AAAAAAAAAA 
    CCCCCCAATT TTTCCCCGGA AAAAATTTTT TTTGAAAATT TTTTTTTGGG 
    GTTTGGGGGG GAAAGGATTC CCCCTTTTTT TCCCCCCACT CCCCTTTACC 
    CCGGGAAAAA AAAAAAAAAA AAAAA

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR