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GT24470

CSHL Arabidopsis genetrap mutant lines

Original: GT24470

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24470

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1186319 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: 0; Region: intron4 (CDS)
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT24470 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTGTAA CTGAAATAAA 
    AACAGAGTTT TCATAGACTT CAGAACTAAA TCAACCAAAA CCAAATAAGC
    TGAAAAATAA AATAAAAAAC GAATGCATAG CAAAAACTGG TATTAAGCTT
    TGAATTCTAA ACTATAAGAC AAGTTTTGTA GTTTACCGCG GGATTGTCCA
    AGCGATCAAG CTCGTGGCCA TCGGGGATAC TCCCAGAGAT ATACTGCCAG
    CCAAGGATGT CACATTCCAA ATCAGCATCC AAAAGTGTAT CCCAAAAATA
    CTTCATTCCC CATTTCCATG GAAGGAGAAA AAACTTCACA GCAAAGCTTG
    AAACAATCAC TCTTATTCTG TTATGCATCC ATCCGGTAGC CCAAAGCTCT
    CTCATTCCGG CATCCACCAA CGGATAACCG GTCCTGCCTT GTCTCCAGGC
    CTTGAACTTA TCAACATCAG CATCCCAAGG GAAAAACCGA AAATGACTCA
    ACAACGATTG CTCGTGAGTA AACGGGAAGT TGAAACATAT ATACCGAGAA
    TACTCTCTTA AACCGATTCC CCTAAGAAAA AGATCTGCAC TTTCTTCTCC
    TTCACTGTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5797799 [Map]; Strand: c
      • AT5G17590.1 - [+] show detail - Putative membrane lipoprotein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24470 - 5-prime edge
    TTTTAGGACT TTACCTGGTC CGTTCTGATC CGAACCCTCT GTTTCTACAA 
    GCGGGTATGG TCTTTGTTGG GGTCCCTTGG CTCTTTTGGT TCTGGGCTTA
    CGTTTACCCC GGGGTCCTCA AACCTTGGGT CATCTTTGTT AGCCAAAGCA
    CCATCTTTAA AAGCAAGAGC GTTACCAGTT TCAATCCGGA AAAAGGGAAT
    CCTAACAAGG CTCCGGAAAC CGTCACGACA ACTTCGGATC CGGGGCCAAG
    GAATTCACCG AGGGAAGGGG AAAAGCACGG GCAATTCGGG AAGGGGGGGG
    TTCTTGGGGA TGAAAAAGGG GGAAAAAAGG AAAATCACAA CGAAAGAAGT
    TCTAAAAATC TGATTCAGGA TCAAATGCAA ATCGAAAAAA AAAAAAATCA
    AAAAAAGGGA AAATCGAATT CAAAAAGCGA TGATAATAAA AGTATGGTCA
    ATAAGGACTG CAAAAGGACT CCTTTAAAAG TATCAAACGA AAACAAATGA
    TCGGAAACGG GATGATCAAT TTCTATCGCG GGGATCAAAA CCGGATCTTT
    TTTTTTTTCG GGTGGGGCAA ACATGATTAA AAAAAAAAAA AAAGGTTTTA
    AAA

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.2

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17590.1

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR