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Mutant Lines
GT24478

GT24478

CSHL Arabidopsis genetrap mutant lines

Original: GT24478

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24478

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 1119168 [Map]; Strand: w
- AT4G02540.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G02540.2 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon2 (3UTR)

TTTACCGACC GTTACCGACC GTTTTCATCC CTATTTGGAT GTTAGGAATA 
AAGGATGTAC ATGACTTTCA TGGACTAACG GCTCAGAAAT TGTGGCGCAC 
TCCACATGTA CCTTAAAATA ACAATTTTCT TCATTACACT CATAGAAGAA 
ACCAATTGTG CACGACGAAA AACAAGCTGA ACAGAAAAAC TCCTGATGGT 
CACTTTTGTG TGCTCTCGAT AGAGTGAGCA GATGCGGATG TATCGGGTGA 
TATATTTTAC GACGAAAACT CGCACATTCC TCGTGGAGAA TGAAATCACA 
TTGCATACAG GAGAAGAAGT TACCAAAATA GATTGGCGTG GTACATGGTT 
GACACAAGTT ATTCTCGTCG TAATCTCTGT CCGTGTTGAC ATCAAGCTTC 
ATATGATGAT GTTCATGACT GAAATGTTGT ATAATTCCTT CGCTTATCGT 
CACAAACGGC TCAACTTCTT CATCCATGTC TTCTTCTGGC TCTCCAACAA 
GTTCTTTACC ATCCCACACA TTGGTCTGTG TGGCACATTT CGAATGAGCC 
GCATAGGAAC AGCCGTCCTT GACGCAAGAA TAGCACCCAT AATCATTGTC 
AATCTTTCTG CGACAAATAC TACAAGACCA ACATTCTTGG

5 prime edge [+] show sequence

Chromosome: 4; Position: 1119264 [Map]; Strand: w
- AT4G02540.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G02540.2 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon2 (3UTR)

AGAGACGCGA AGAACACGTT ATGTTTGCAA GGGTTTAAGA AGAGGTGGTA 
GTGACACATT CAATTGCATT GAGGAGTGTG ACTTTGCTTT GTGCTTTGGA 
TGTGCTACTA TACCTAATAT GGTGAGGTAT AAGCATGATA AGCATATGCT 
CACTCTTTCT TATGGGGAGA AGACAAGTAC CATGACGTAT TGGTGTGAAG 
TTTGTGAGGG AAAAATAGAT CCAAAGAAGC GGTTTTACAT GTGTGATGAG 
TATTGTTGTG TCACCCTACA CATGTCATTT ATGCTTGGTC GGGACTTAAA 
CATGAAGCCC GGTTCATCGT TGATAAGAGG CGATAAAAAG ATATATGTAT 
TGCCTAACAA TCATATGTCT AGACCTATTT GCCTTCATTG TAAGAAGCGC 
TGTCCATTCA AAGCATTTTT CATAGAGAAT GAATTAGCAT TTTGTTCCAT 
ATTTTGTGTT ATGTCGAAAA ATTAACCATG TAGCTTCATG TACCTAGCTC 
TTTTTAAGAG AAATATCTAT GAATTTTCAT TCTGTTGCAT TGATTAGTCA 
AACAATGATA CGTCCAATAT TGTTATGAGA TGTTTCCACG GAAATTTTTC 
TCAAAGAAGT ATCTTTCTTT TCTTGGATTC TTGAAAGACT TACTTTTAAA 
TTTT

AT4G02540.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02540.2

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G62030.1).
Link: InterPro Scan - TAIR