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GT24483

CSHL Arabidopsis genetrap mutant lines

Original: GT24483

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24483

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181519 [Map]; Strand: c
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT24483 - 5-prime edge
    CCTGCTTACC GGTCAGTGAG TCCAATCATT TTCTTACTTA CAGATTTTAT 
    GGATAAATGT TATAATAAGA AAAGGAAATA ATATAATCAT CTATGCATGG
    AATAATTGTA GTGGGAACTA ATAATGAGTA TGGGTTGTTT TTGGAAGCAG
    GTGGCATGTG GCTATGCCCA AAATATTACA ACAATCCATC TCCATACTCT
    CAGATGCTGG TCTTGGAATG GCTATGTTCA GCTTAGGTAA ACACTAACCT
    TGCTTCATGC AAATCTAGAC TTGTTTTGAT GATGATCTAA TCTTTAAAGT
    TGGGTCCAAA TTTGTTCTCA TCTTATCTGT TAAAAAAGAT TCATTTAATG
    CAAAGTGGGT CTGTGTGTTT AATTAGTCGT AGTTGTCCAG CTTGTAATTG
    GTAAAAGTCA TATAAACTGT ACAAAGCACT TACCCAAAGA GAGAATCCTG
    ACCCTCTGAC CCAAACATGT TGGTGTGTCC GGTCCCCACG CCAAGTCCCC
    ACTGGCTCTG TCTACTTATT TGGGTCTCAC CAAGTAAATG ACCTAACTCT
    TTGCTGTCAA TTTTCTCAAA TCCTTTTAGT TAACGAATTG CTTATTTTTG
    GTGTAATTTT AAGGTTTATT

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR