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GT24501

CSHL Arabidopsis genetrap mutant lines

Original: GT24501

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24501

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21949692 [Map]; Strand: w
      • AT3G59400.1 - [+] show detail - enzyme binding;tetrapyrrole binding
        Distance: 0; Region: exon1 (5UTR)
      • AT3G59410.2 - [+] show detail - protein kinase family protein
        Distance: -496; Region: promoter
      • AT3G59410.1 - [+] show detail - protein kinase family protein
        Distance: -877; Region: promoter
    Flanking Genome Sequence: GT24501 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ACCTGACGTG ACTCTTCTCT 
    CTCTTCCTCT TCATCTCACT CGACAACAAA CTCTCTCCAC CACCACCACC 
    ACTCCTCTCC TTCTTACACA CACCACCGCA ACAATCTCCA TTGCCAATCT 
    CACTTCGGAC CAACTTCTCT TTCCCTCAAA CAACCCACTT CCGCCGCAAC 
    ATTCTCACTA ATCTGCTCTG CTTCATCTCA CTCGACA

AT3G59400.1

Model type
Protein coding
Short Description
enzyme binding;tetrapyrrole binding
Curator Summary
GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
Computational Description
GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59410.1

Model type
Protein coding
Short Description
protein kinase family protein
Computational Description
GCN2; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G02760.1); Has 102900 Blast hits to 101457 proteins in 4494 species: Archae - 105; Bacteria - 12314; Metazoa - 36099; Fungi - 10698; Plants - 26119; Viruses - 326; Other Eukaryotes - 17239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59410.2

Model type
Protein coding
Short Description
protein kinase family protein
Computational Description
GCN2; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G02760.1).
Link
InterPro Scan - TAIR