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GT24512

CSHL Arabidopsis genetrap mutant lines

Original: GT24512

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24512

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12047195 [Map]; Strand: c
      • AT2G28250.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 658; Region: intergenic
      • AT2G28260.1 - [+] show detail - cyclic nucleotide-gated channel 15
        Distance: -2794; Region: intergenic
    Flanking Genome Sequence: GT24512 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAA ACATAATCAT ATGTTTTGCT 
    CATATGTTTT TAATACTAAG AACTATTTTC TATAGTCTTG ATTACTTAAT 
    ATTAGAATTT AGAAGACTAG AAGTTTTCAT GCCCTATGAG AATAAGCAAA 
    ATGCTAAATT TTCCGGCTAC AATCTACGGT ATTAAGTTTG AACGAACTAT 
    TTTCAATCTT TTGCAAAGAT TTTTCAAGAT AGTTGAAGTT AACCAAAATC 
    TTTGATCGAA GAGAGTCGTC GTTCCATATG GTAAGTTTAT ACATTGTGAC 
    TGATTTTACA AATGTTTAGG AAAAGTAATT GGGTAGTATA GTAACATCAT 
    TACATCAACA TGTTGGATAA TCGAAGAAAG AGAAGGTGGG GGATGATGGG 
    ATCAATCAAG AAAAGCCCAT ATGGTGTGTT CCACAGACTG GACGAATCAA 
    ACCCATTTAT TCCAAATGTA ACCGTCCATT AATTGCCAAC CCAAGCTTTG 
    TCTCTTAATT TATTCTTTAC TCTATAAAAA TGAACCAAAT AAGAATTATA 
    AGGAAAAATA TCAAAAGCAT TTTCAGAGGA AAGTTTTATA CTCTTACTGC 
    ATTGTTGCAA TTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12047103 [Map]; Strand: c
      • AT2G28250.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 566; Region: intergenic
      • AT2G28260.1 - [+] show detail - cyclic nucleotide-gated channel 15
        Distance: -2886; Region: intergenic
    Flanking Genome Sequence: GT24512 - 5-prime edge 
    GTTGGATATA ACATCTCTTG AAATTTTCAT ACTTAGACTC GGTTTTTCCC 
    AAACATGTGT GTAGGAATAT ATGATGTATC ACCTCTATAT CGTATTAAGT 
    CCTCATTAGT GGAGAAGCAA AAGGCTGCAT AGCCCATCAA GAGTCGATAA 
    GGATACGCTC CTATTTACCT TCCAACTTAG AGTGGTTGAG GCGGAGAGAA 
    GGATCTTGGC ACTAAAAATA ACTCAATCAA GTATTGTTCT AATCTCACAA 
    TGCTATTTAC ATATGATAGC TTGTTCTTTT ACAAAACAAA CTTACAAAGA 
    AAATCATCAG TGACGTAAAT TAATAAATCT TCATACAATT ATTTTTACAT 
    GATTTAGAGG TATTCTAGCC TTTTAGTCGG TTTTGATGCA ATATTTGCTA 
    TCTAAACTCT ACTTTGCATA ACATCTAAAA ATCCAAATTT TATGAATTAT 
    CCAAATGAAA AAATGAACAT GCCCATTATG TATGTGTAAT TGTGTATGCA 
    AGGCCGGTTC CTAAAGTGTA GTGGTTGACA CGAACTCTTT ACAATACATA 
    AGGGCCATGC TCATTTCGAT TTTTTTAACA ATGAATCAAT TCTGACTTAA 
    CCATTTTTTT CCAAATAAAA AA

AT2G28250.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28260.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 15
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 15 (CNGC15); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3177 Blast hits to 3099 proteins in 290 species: Archae - 0; Bacteria - 161; Metazoa - 1483; Fungi - 19; Plants - 962; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Link
InterPro Scan - TAIR