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GT24517

CSHL Arabidopsis genetrap mutant lines

Original: GT24517

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24517

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18050203 [Map]; Strand: c
      • AT4G38600.1 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: -911; Region: promoter
      • AT4G38600.2 - [+] show detail - HEAT repeat ;HECT-domain (ubiquitin-transferase)
        Distance: -951; Region: promoter
    Flanking Genome Sequence: GT24517 - 5-prime edge 
    TAGTGTCCCA GACTATAAAT TCCAACCAAA CAAAATAAAG AGGTAATTCC 
    ATTTTCCATT ATTTTTGTAA TATAAATGAT CTATTGTAAC CTACTTAACA 
    AAGATGTCTT GTTTTAGAAA AAAAGTAGTA GAAGAAGAAA AGACAACCAA 
    ATCTCTACCG AACCACATGA AAAACCAAAT CTCTACCTTA AATTGTTTAT 
    ATATATATTA ACGTATATAC ATGTCATTGA GTAGTTTATA TATACAAAGA 
    AAGTGAAGCG CTCTACAACT AAGGGGCTTT AAAATCTCTA TGAAAGCCTT 
    TGCAGAGCAC GATCTATAAC AGATGGACGG GCCCGGCCTT TATACAACAT 
    TATGTTTTAT TCCAATTACA AAGAGGCCCT CAAGTTTTGT GTGATATATT 
    TTTCCAAATG TGAAAAAACT TAAAAACGCA GGAAGGACCG GGTATGATAC 
    GAAACGACAT CGTATGAGAT GGGTTCGATG GAGTGAAGGA AACACACGTA 
    GCCCGATCGC CGTGTCAGTC ACTTGTTGTG GTAAGGAAAG AACAAAACGC 
    TACCGTATTC GTCCCCGGTC GCCTCTCTCT CTTTCTCTCT CTTTTCTTTT 
    TTTATATAAA ATTTATATGT CTTCTTCTAT TTTATTC

AT4G38600.1

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38600.2

Model type
Protein coding
Short Description
HEAT repeat ;HECT-domain (ubiquitin-transferase)
Curator Summary
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
Computational Description
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink).
Link
InterPro Scan - TAIR