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GT24521

CSHL Arabidopsis genetrap mutant lines

Original: GT24521

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24521

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28131876 [Map]; Strand: c
      • AT1G74880.1 - [+] show detail - NAD(P)H:plastoquinone dehydrogenase complex subunit O
        Distance: -799; Region: promoter
      • AT1G74890.1 - [+] show detail - response regulator 15
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT24521 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTAACA TCTACAAAAA CAACAACAAC 
    AACAGAGAGG ATAGACACAT AATTAGATTA CAGTGTTAAG ATCCATTGAT 
    TCAGTTTTGT ATCTTTTAAC TATAGTGACT TACTGTTCTA TACGAGGTTG 
    TATGTTCTCA GAAGACATTA TCACTACTGG GATTTCTCGG AGTGCTGAAG 
    ACTCCTGGTA AATATACAAC AGAATTTTTG TAAGGAAAGC ACGAGAAGAG 
    CTTATTCAAA TCTTGCTCTA ATAAATGACA CAAAATAGAA ATTTACTTTG 
    ATCTTCTTGA GGAGTTCATA TCCTGTTAGT CCCGGCATAG AATAATCCGT 
    CACTATCAAG TTCACTTTCA AATCCTGTTA TCAAAATTTG CAAAATTGTT 
    CATATAAACG ACATCAATAA ACAGATAATA AAATCATCCT CTTAAAGGTT 
    AAACTTTTGA TCCACATTGT GAAACCTTAG ATTTCTTGGG AGCCAAACCA 
    GCATAAGAAC ACTTCAGGTT TCAACCACTA GGGTTGATTT TGCTAAAAAA 
    CAGAGTGATT CTCAAGAATG AATGAATAAT ACCTTAAAAC CAGAAGATCC 
    TTTGTCTCCA TCTAAACCAA GATACTGAAA AGCCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28131781 [Map]; Strand: c
      • AT1G74880.1 - [+] show detail - NAD(P)H:plastoquinone dehydrogenase complex subunit O
        Distance: -704; Region: promoter
      • AT1G74890.1 - [+] show detail - response regulator 15
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT24521 - 5-prime edge 
    GTATGATAGA AGGAGCAGAG GAGTTTTTGC TAAAACCGGT GAAATTAGCT 
    GATGTGAAGC GGTTAAAAGA ACTTATAATG AGAGGTGGTG AAGCTGAAGA 
    AGGAAAAACC AAAAAACTTA GTCCTAAGAG AATCCTACAA AACGACATTG 
    ATTCATCTCC ATCATCATCA TCATCAACAT CTTCATCATC GTCGTCTCAT 
    GATGTTTCCT CCCTTGATGA CGACACTCCA TCTTCCAAGA GGATCAAATT 
    AGAGTCTAGG GGTTAATGAT TGAGCTCAAT CTTTTCTCAC GTTTTCTTTT 
    GATTTCCTTG TGTAATATAC ATTATTTTTG ATATATGCAA CTATGCAAGT 
    CTAGATTCTA ATGCTCACCT TTTTACTCTG TTTTTTTTTT TTTTTAAAAA 
    AAAAGGGGAA CAGGGGGGAA ATGATTTAAA CATTTTTTAA AAAATAAAAA 
    TTTTGCCCAC AGAAATTTGT TTCCCCCTTC CCCCCCCAAA CATTTAAATT 
    CTATAGGGGG ACAAAAAATT TAAAAGACCC CCTAAAAAAA TTTTGTAAAT 
    TATCTTCCCG GGGAAAAACA CAATTTCCCT TGGGGGGGGG TATAATTCAA 
    AAACTTTCCG GCCCCCAAAA AAAAAAAAAA AAAAAAAA

AT1G74880.1

Model type
Protein coding
Short Description
NAD(P)H:plastoquinone dehydrogenase complex subunit O
Curator Summary
Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational Description
NAD(P)H:plastoquinone dehydrogenase complex subunit O (NDH-O); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit O (InterPro:IPR020905); Has 87 Blast hits to 87 proteins in 27 species: Archae - 0; Bacteria - 33; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G74890.1

Model type
Protein coding
Short Description
response regulator 15
Curator Summary
Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.
Computational Description
response regulator 15 (ARR15); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 7 (TAIR:AT1G19050.1); Has 46084 Blast hits to 45371 proteins in 2654 species: Archae - 273; Bacteria - 40324; Metazoa - 30; Fungi - 580; Plants - 1499; Viruses - 4; Other Eukaryotes - 3374 (source: NCBI BLink).
Link
InterPro Scan - TAIR