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Mutant Lines
GT24532

GT24532

CSHL Arabidopsis genetrap mutant lines

Original: GT24532

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24532

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 23440967 [Map]; Strand: w
- AT1G63206.1 - [+] show detail - Cystatin/monellin superfamily protein
  Distance: 36; Region: intergenic
- AT1G63210.1 - [+] show detail - Transcription elongation factor Spt6
  Distance: -2721; Region: intergenic

TACCGACCGT TACCGACCGT TTTCATCCCT ATGACCCTCA TGTCTCCAAC 
GCACTCCAGA GACCATAGTT AAAGAAACAT AGAATAATAA CCAATTTCAA 
AATCATTCTA GAATATAAGA AACAAAAACA GGATTTTGCT ACAAATCTAT 
GATCAATCCA AAAGCTGGCT ATATATTACA CGGAAACAAT TACTTTTGCA 
AATTAGTATA GGTGAACATC GGTGAAGCTT AGTCCGAATG TATCCCAAGA 
CATGATATCT TAGAGCGCCA CATGTACTCT AAATAGGTGA ACAATTCTAC 
CATAAACTAT GAACACTAAT TTAGCTCACT GCTCACCAAG AAAACCACAT 
TGGATATCGC ATAAGGTCCT ATGCCAAGCT GCAAAAATCA TGAACAGAAA 
AGAACAGATT AAAAGAGATT CGAGAGTATA TTAACATAAA GGAAGAGATG 
AATCAAAAGT AAACGACGGG TTTACCTTTT ATGTGTCTTG GAAGATCCAA 
CGCATTTGAC TGACAAAACA ATCAAATTTT ACCGTTACAA AAGAGAGTCA 
TATATGCAGA GGATGATCCA AAAGAGAAAG AATGATACAA ATGCACACCG 
TAATTGCTGA TTC

5 prime edge [+] show sequence

Chromosome: 4; Position: 1119265 [Map]; Strand: w
- AT4G02540.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G02540.2 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon2 (3UTR)

GAGACGCGAA GAACATGTTA TGTTTGCAAG GGTTTAAGAA GAGGTGGTAG 
TGACACATTC AATTGCATTG AGGAGTGTGA CTTTGCTTTG TGCTTTGGAT 
GTGCTACTAT ACCTAATATG GTGAGGTATA AGCATGATAA GCATATGCTC 
ACTCTTTCTT ATGGGGAGAA GACAAGTACC ATGACGTATT GGTGTGAAGT 
TTGTGAGGGA AAAATAGATC CAAAGAAGCG GTTTTACATG TGTGATGAGT 
ATTGTTGTGT CACCCTACAC ATGTCATTTA TGCTTGGTCG GGACTTAAAC 
ATGAAGCCCG GTTCATCGTT GATAAGAGGC GATAAAAAGA TATATGTATT 
GCCTAACAAT CATATGTCTA GACCTATTTG CCTTCATTGT AAGAAGCGCT 
GTCCATTCAA AGCATTTTTC ATAGAGAATG AATTAGCATT TTGTTCCATA 
TTTTGTGTTA TGTCGAAAAA TTAACCATGT AGCTTCATGT ACCTAGCTCT 
TTTTAAGAAA AATATCTATG AATTTTCATT CTGTTGCATT GATTAGTCAA 
ACAATGATAC GTCCAATATT GTTATGAGAT GTTTCCACGG AAATTTTTCT 
CAAA

AT1G63206.1

Model type: Protein coding
Short Description: Cystatin/monellin superfamily protein
Computational Description: Cystatin/monellin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT1G63190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G63210.1

Model type: Protein coding
Short Description: Transcription elongation factor Spt6
Computational Description: Transcription elongation factor Spt6; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: sperm cell, flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: global transcription factor group B1 (TAIR:AT1G65440.2); Has 3998 Blast hits to 3944 proteins in 1964 species: Archae - 20; Bacteria - 3376; Metazoa - 203; Fungi - 157; Plants - 65; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02540.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02540.2

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G62030.1).
Link: InterPro Scan - TAIR