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GT24536

CSHL Arabidopsis genetrap mutant lines

Original: GT24536

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24536

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 226311 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -119; Region: promoter
    Flanking Genome Sequence: GT24536 - 3-prime edge
    CCGTTACCGA CCGTTTTCAT CCCTAATTTC TATTGTCAAG CAAGTACAAG 
    AGTGTAAGTG TATATCTCTC TCTATATATA CATATATGTC ACATGTGCAT
    AAAGATTTTG GTTTATCTAT AAAACAGGAC AAAAGGCAAA GTATAGTAGA
    CCCGAAAAAC AATCTCTTGG TAGCCTTTTC ATCTCTCTCG ACAAACAAGT
    AAACCTCTCA TCATTCATTT CCACACAGCA CTGAAACTCG AGCATTTGCT
    CTCTCGAATC CCATTTCCCT AGCTAAAAGG TTCGGAATTC CACAACAACA
    ACAAAAGACC TATTTTGTGA ATCTTTTCTC TAAATTAAGA GTTATTAGGG
    CAAATTTCTA CATAGCAGGG GCTACATCTC CAACAACAAC CTCATCAACT
    ATTTGCCCCT CTCTACTACT CAACCTCCTC TTCATC

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR