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GT24538

CSHL Arabidopsis genetrap mutant lines

Original: GT24538

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24538

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1313665 [Map]; Strand: c
      • AT3G04780.1 - [+] show detail - Protein of unknown function (DUF1000)
        Distance: -575; Region: promoter
      • AT3G04790.1 - [+] show detail - Ribose 5-phosphate isomerase, type A protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24538 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGTCGGTATC CCAACGTCGA 
    AACGAACGGA GGAACAAGCA CGGTCGTTAG GGATTCCTCT TGTTGGGTTA 
    GATACACATC CGAGAATCGA TCTCGCTATT GACGGAGCAG ACGAGGTAGA 
    TCCGAATCTT GATTTAGTCA AAGGTCGTGG AGGTGCTCTT CTCCGTGAGA 
    AAATGGTGGA AGCTGTGGCT GACAAGTTTA TTGTTGTGGC TGATGATACC 
    AAACTCGTTA CAGGACTCGG TGGAAGTGGA TTAGCTATGC CGGTGGAAGT 
    TGTTCAATTC TGCTGGAACT TTAATTTGAT TAGATTGCAA GATCTCTTCA 
    AGGAATTTGG ATGTGAATCA AAGCTTAGAG TTGATGGTGA TGGCAAGCCT 
    TATGTGACTG ATAACAGTAA TTACATTATT GATTTGTATT TTAAGACTCC 
    TTTGAAGGAT GGATTCGCTG CGGCTAAAGA GATTGGGAAG TTTCAAGGAG 
    TGGTGGAGCA TGGTCTGTTT CTCGGAATGG CTACTTCTGT CATTATCGCT 
    GGAAAGAATG GCGTTGAAGT TATGACCAAG TGAGGTTAAA AGTTCAATCT 
    TTCTCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1313570 [Map]; Strand: c
      • AT3G04780.1 - [+] show detail - Protein of unknown function (DUF1000)
        Distance: -480; Region: promoter
      • AT3G04790.1 - [+] show detail - Ribose 5-phosphate isomerase, type A protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24538 - 5-prime edge 
    TATCGTAGAG TTCACCGGAA GAGAGTAGTT TCCCGATCTG ATCAACAGCG 
    AAAGCTGCGG TGGATCCGGT TCCGAGCCCT AGAACCATCC CAGGTTTAAT 
    TGCCTCCACA GCTTTCTCCG CCGCGAGCTT CTTCAAATCG TCCTGTGAAA 
    GCGCGACGGA TTGAGCCTTG ACGGAGAATG AAACGGAGGT TCGAGGAGAA 
    GAGCCAGTGC TGCGTAGGGC AATAGAAGGA GTGCGTAGCG TAAGGTGAGA 
    AGAGGAAACG AAGGATAAGG AAGCCATTGG AGAGAGAGGA TTGAGAATGG 
    TTGGAGAAGA AATAAAATGA AATCGAAAGG TTTGGTTTTT GACTTTTGAG 
    TGGAAGAGGA AGGTTTAGTG GCAAGTTATA GAGTTTTGTA GTTGGTTTGA 
    GGGTAGTATT GGAATACTAG TTTTAAGGTT GTTGTATTTG GGTTGGTGAA 
    GATAATAACC TGCTAGACCA ATCAAAGTGT TAAGTATACG ATGTCGTTTT 
    TGTTTCTTTG AGAACAGAGT TATATAAAAA CCTTTTTTGG TTTGGTTTCG 
    TGGAGAGTCT AATTATTTTC TTCCACTTTC TCGATCT

AT3G04780.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1000)
Curator Summary
Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.
Computational Description
CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT2G25950.1); Has 606 Blast hits to 606 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04790.1

Model type
Protein coding
Short Description
Ribose 5-phosphate isomerase, type A protein
Computational Description
Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).
Link
InterPro Scan - TAIR