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GT24542

CSHL Arabidopsis genetrap mutant lines

Original: GT24542

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24542

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19048941 [Map]; Strand: c
      • AT2G46400.1 - [+] show detail - WRKY DNA-binding protein 46
        Distance: -4115; Region: intergenic
      • AT2G46410.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 231; Region: intergenic
    Flanking Genome Sequence: GT24542 - 3-prime edge 
    TTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTCA GTTTAAGCAT 
    TCCCCTATGC AGAAGAAATA AGAGAGACCT TTCACCTTTG TTTGTTTGTA 
    TGAAAGAACA ACAGTAATTT TTTTTTGGAT AAAATAGCGA ACATAGTTAA 
    ATTTAAAATT TACAGTCGAT CTTAGGAAAA CAGACTTTAG AAAAGTGTGA 
    TTTATCTCAT TAAATCACAG CTACTAATAC TATACTTCTA TAGAGGGATA 
    TATCATGTGT CGATGGAGGC TGGTAAAAAT TTGAAATTCC TAAGCAATTT 
    TTTCTTCTTA TATATATAGA TAATTATACA TTCCAAAATA GTAATTCAGG 
    GACAGGTCCA TTTCCTTTTT TTCTTGTCTT GTGAATTAAG GAGAGGAAAA 
    TTTTCTTTTA ATCCAAACAA AAAAAATCTT TTCCAAAAAA AGTCTCTTCG 
    TCTGTTGGCA AAAGCGACGC CGGGTTTCAT AAGCCAATAT CTCTCTATCT 
    CCTCCGGCGT CCGTCCCGGG ATCCTTCCGG CGATCAACTC CCACCTACGC 
    GCCACGTAGG ATAGGCTAAC AGTCAGTGTT GAGGAACTTA CACTAAACCA 
    AATACCTTTT ATTCCGATAA AAACCGCATA AGGTTTGTAA TTCGGTTAAA 
    ATTCTATGGA ACCGAACCAA AATCGTATTT TACACTTTGA CTTCATACAA 
    ACATGCTGTA ATCAAAATTG AACCAACCTA GCCAAAGGGA GTTCTGACAT 
    AAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19048846 [Map]; Strand: c
      • AT2G46400.1 - [+] show detail - WRKY DNA-binding protein 46
        Distance: -4020; Region: intergenic
      • AT2G46410.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 326; Region: intergenic
    Flanking Genome Sequence: GT24542 - 5-prime edge 
    TGGTTTATTT TTTCGTGATC GGAAATGAGA ATCTGTAAGT GGCCTACGAT 
    ATGGGTCAAC GAGGTAGCTC ATTTATATGG GCCATAAAGA AAGCCCATTA 
    TTAAGTTGAG ACTTTTAAGA TAAAATGTTT CCACGGTCAA CGATTTTACA 
    ACAGTAGAGA CACATGCATG CCGTTTAGAT ATTTGGTTTA AAACAATCAT 
    GCCGTTTCAC TGTATGTGTG GCCTAATGCA AGTGTATGCA ACTGTTATTA 
    TTTTTTGTTT TGCTTGCTTA TTTTTGAATA GCTTCTGTTA CCTGCCAAAA 
    AAAATACCAC GATCATTACT AATTATCCAT CCCACTGCCA AAAAAATTTG 
    TTGGTAATGA AGCGGAATTA GGGATCATCC CATATGATAT TAATTGTTGT 
    TCCTCTGTTG TAACATTGTT TCATTCTCTT GTATTCACTA AAGAAAATAA 
    AGATTCAGTA GCGTCATCGA ATATATAAAA TGCAAAGTTT CCTTTTATTC 
    AATCAAGGAA GCATATATAT CTACCCTTTG TGCCCATCCT TTTTAATTCT 
    TTGGATTGAA TATAAAGATT CAAAGCTATA CGATTAATGA CGTGGTAAAA 
    TTTACGATTA GTTCCAAAAA TTCCCTGATC TCTCATTTTT TATTATCTTC

AT2G46400.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 46
Curator Summary
member of WRKY Transcription Factor; Group III
Computational Description
WRKY DNA-binding protein 46 (WRKY46); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23810.1); Has 3385 Blast hits to 2951 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3370; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46410.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.
Computational Description
CAPRICE (CPC); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G53200.1); Has 2615 Blast hits to 2615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2602; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR