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GT24562

CSHL Arabidopsis genetrap mutant lines

Original: GT24562

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24562

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3252441 [Map]; Strand: w
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -376; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -681; Region: promoter
    Flanking Genome Sequence: GT24562 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATCT CGTTTGACAT 
    AGAATCCTTT CTTAAGAAGA CTAGTCATCT TAGGGATCAA TTCCCCCACA 
    AGTCTCAACG ATTCTCGAAA CTAGTAGCAC ATCTATGGAT TTTCCAGCGA 
    GTCAGGTGTC CCTAGAAGCT GACCTCACTT CCATCGGAGC TGTCTATCGA 
    ATGTTATCCC TGCTTCTATC CAGAAGATGC GATCTTTAGA ACTACGAATC 
    CGTCTGAATA ATCCAGCTCA CCACGGGGCC GATTTCCCGA CAAATCACAG 
    GGAATCTCGT AAGGGTTAAT ACATCTACGG ATCGCCCAGA GAGTCGTCTT 
    TTCGGAGAAG TTGACCTCGC CTTAATCGAA GATATATGCT GAGATATAAA 
    CGTTTACCTC AAGCAAGTGC AACCAGTCAT GAGACCCAAC TCTATAAAAC 
    CAGTCAGCTT CGGGATCGTT TTCCTTGAAA ATCCTGATGA ACTAGGCAGT 
    GATATACCTA TCTACAGGTC GGCTTCATCT CACTCGACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3252572 [Map]; Strand: w
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -507; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -550; Region: promoter
    Flanking Genome Sequence: GT24562 - 5-prime edge 
    GATCAAAGGG TAGTTAGATT CCCTGGAAAG CTAACAACCG GGGCAATCCG 
    TGAACATATT AAACAAATGG GGAAGTCAAT AAATTTATTT TACATTATAA 
    CTGGTTTAAG GCATTTAGCT ATTATATTAT ATTTATGGAG TGGAGGTAAG 
    AAGACAACAT TTTTCTAAGT ATTCTAGTTT GTTTTATTTA TTTATTAAAG 
    CAGTAAGTGC TTAACCTGCA CTATGCATGA GCAAAAGTCT AAAAATGATA 
    TAAAAATATT TTGTAATAGA TTTGAGATGT TTTGTTTCTC ACTTTGAATG 
    AAAAAAAAAA CTTTTTACAA AAAAATTTTT TGTCGTTTTA TGTAAAAAAA 
    ATAAAATTTA AAATTTAACC CAAAAAAACC CTCCTTTAGG AATTATAGAA 
    CCCACCCTTT GTCTTCCTTT CATCTTTTTC AACAAACGGA ATTTTT

AT5G10336.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR