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GT24563

CSHL Arabidopsis genetrap mutant lines

Original: GT24563

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24563

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21634748 [Map]; Strand: w
      • AT5G53300.4 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: -501; Region: promoter
      • AT5G53300.1 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: -519; Region: promoter
      • AT5G53300.2 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: -585; Region: promoter
      • AT5G53300.3 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: -519; Region: promoter
      • AT5G53310.1 - [+] show detail - myosin heavy chain-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24563 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACGTGTGA TCTCCTCCGT 
    CTACCTCACC CACACTTCGA TCTTCATCAA AATCAGGTGG AGGTGATTCT 
    TCGCCGTCGA ACTTCGGCCC CTTTTGCTCC TTCAACCGGT TCATCTCTCT 
    CGACGACGAA CTCGAAATCG GAATCGGTCA GCTTATTCTC AGATTCTGCG 
    TTAGAAAAAT CTCCAAAGTG AGAGAGAAGA CGTGGCTTCA AATGATTCGA 
    TCGATTAAAA GATACAAATC TCAGCCGTTA GATTATATGA CTTCATCGCA 
    ACGCGTTTCG ATGCCACTTG ATTTGAAATT TATAATAAAC TCGCAGCCGT 
    TAGATTTCAA TACCACTTGA TTTAAGGATA GGATATCAAC CGTTAGATTA 
    GATGACTTTT TAAGACGATG TCGTTTCAAT GCAACTTGAT GTTTTAATTA 
    AGAAGCGCCG CGTCGTTTCA AGGTCCACCG AATAATAAGA GGGTTAAAAG 
    TAGAGTCCAC TAGTCAAAGA AAGTAAATAA TCCACACGGT ATTTATTGTA 
    GACGTGAGCA CAGAGAATAA TTCGTATTCT TCGTCTTTCG TCCACCACCA 
    TCTCTATTTT CTTCCTTTCC CCTAAGTCTT GGTTCTTC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT24563 - 5-prime edge 
    GGGAAACATA TAAAAGCCAA AAAAACCTAA AACGAAGTCA TTAATTTCCC 
    TTTAAAAAAA AAAAAGGGAA ATCTTTTTTT TCTAAAAAAT TTTTTCCCCC 
    CTTTCCGGGT TTTTCCCCTT TTTTAAACTT TCCCCCCTTT CCCCGGGGGG 
    TTTTTTCGAA AATTTTTTAA AAATTTTTTC CCCCCCCAAA AAA

AT5G53300.1

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1); Has 10679 Blast hits to 10640 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4642; Fungi - 2339; Plants - 1932; Viruses - 26; Other Eukaryotes - 1736 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53300.2

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53300.3

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.3); Has 10254 Blast hits to 10224 proteins in 394 species: Archae - 0; Bacteria - 4; Metazoa - 4493; Fungi - 2149; Plants - 1944; Viruses - 23; Other Eukaryotes - 1641 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53300.4

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1).
Link
InterPro Scan - TAIR

AT5G53310.1

Model type
Protein coding
Short Description
myosin heavy chain-related
Computational Description
myosin heavy chain-related; FUNCTIONS IN: motor activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin tail 2 (InterPro:IPR010926); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR