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GT24567

CSHL Arabidopsis genetrap mutant lines

Original: GT24567

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24567

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1880962 [Map]; Strand: c
      • AT3G06210.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24567 - 3-prime edge
    TACCGACCGT TACCGACCGT TTTCATCCCT AGCAGCACCA GGCCACGTGG 
    ACTGTATCCG GCGTCGGAAT CAGTAGCTTC CGCGTGCTCC AATCAAGCTC
    AATTTCACTT CTCAGAAATT TAAAACGAAT CAGGTTTCGA TAATCTCTTC
    TCTCTTTGCT TAATCGAATT GGAATCGATT CAATTTAGGG TGAACATTTT
    AGTTTCTCTG CAGCGATGGG ATCTTTAAGC CGATCCTCGA CAATGGATTG
    AGAGAAGCGA CGACGAGAAT CGGACGACAA GAGATCTTTG ATCGTCGAAC
    AACTCTGACA TGGAAGAACT CAGAAGTTCC TCTTCTTCCA TATGCGAGAT
    GGCTTTACAT CTCCAGCTAT GTGAGTCGGA TTCTCTACTG GCTCCAGCTT
    TTGTCAGCGA GTGCTTGTGT GGCTCTGTCT TCCTACAAGC TCGTAATGCA
    CAACTACGGA GATGTTCAAG ACGGAGACTT GGACAAAAGG AATAGACAAG
    CCGCTCTCAG CATCTTCTAC TCGCTTGCTC TTGCCGAAGC GTTGTTGTTT
    CTTGCGGAGA AAGCTTACTG GGAGTGGGAG GTCAGTGTGT GTCACTTGCT
    TGAGAATGTG ACTAGAGAGT GTGGGTTTGG GGTTACTGGA ATGGTCTCTA
    TCAAGAGATT CTTCTATGAT GCTTACTCCA AGTCTGTCAA TGGGAGTATC
    TTTGATGGTG TGAAGATGGA TATGGTTAGC TTTGCTATGG ATCTCTTGGG
    CTCGAACTGC TCTGATGAAC AGCTCATCGG AGCGAGGATT C
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12511134 [Map]; Strand: w
      • AT4G24080.1 - [+] show detail - aldolase like
        Distance: -224; Region: promoter
    Flanking Genome Sequence: GT24567 - 5-prime edge
    CTTTATATCT TTTAAACTCC ACGTAATAAC TCATTTTTGT TTGTTTTAAT 
    CAAAAATTCA AACGTCTAAA ATTTCGTCTT AAATAAGAAA TGATATTAAG
    AAAAATATCT TTGGATTAAT AACAGATCAC CGAAAATTAG AATATGGTTT
    TACCAACCCA ATTAAATTCT CAAATTAATT GGAAAGAGAA TAATGTTGAC
    AACAACAAAA AGGAAATAAA TCGCATGCAA TGAAAGGAAT GAATCTTCTT
    CTTCTTCTTC TCTATTAACG CTTCTTCTTC TTCTCCTTCT TCATCACCCT
    CCTCCACTTC TCTCAGTCAC ATTGGCGACC AAAAAATCTC TGAAATCACG
    TCTCCAAGAT GGAGAAAAGC TTCTCGGCCA CTTTCTTCTC TCTCGA

AT3G06210.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24080.1

Model type
Protein coding
Short Description
aldolase like
Computational Description
aldolase like (ALL1); FUNCTIONS IN: carbon-carbon lyase activity, catalytic activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: sporophyte; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), HpcH/HpaI aldolase (InterPro:IPR005000); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT4G10750.1); Has 3952 Blast hits to 3952 proteins in 838 species: Archae - 22; Bacteria - 2525; Metazoa - 2; Fungi - 198; Plants - 35; Viruses - 0; Other Eukaryotes - 1170 (source: NCBI BLink).
Link
InterPro Scan - TAIR