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GT24582

CSHL Arabidopsis genetrap mutant lines

Original: GT24582

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24582

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23187468 [Map]; Strand: w
    Flanking Genome Sequence: GT24582 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAACCATGCA TTTCTTCGCC 
    TATACTATTA GTGTGTTTAT TCCATCTTGC TACTTCTCTC TTTTTTTAGA 
    TTTTCAACGT ATGTTATTTG CTCAATAATA TTTATGAATT TCTTAAATAA 
    ACAGTGTAAA GACATGCATG AGATAATCTA CCGATGTGCT CTAGCAAACA 
    TGCAAAAGAT CGTTTTATTT TTTTTAATTT TTTTTTGGTA AACTGCATAT 
    GATCGTTTTA GGTGTTTTTT TTATATACTT CAAATTTTAT AAAAAGGAGG 
    GTTTGAAAAT TGGCAGTATT TTTTAAACGC CTAAAATCCC TTGAAAAAAA 
    ATCGGTTGAA CAAATATAAG CAAAAAAATA AAAATTCGGG GAGCAAAATG 
    TTAAAACTAA TAAAGTAAAC TACGGCCAAA AACTTGCCCA AAATTAATGT 
    CTCCCCAATA TTTATTAAAC CCCACTTCTC CAAGGGGTTT TAAAGCCCAG 
    GTATAAAGAA CCTTTAAAAC TTTTGACAAA AACAAAAAAA AAAGTATTTA 
    TAAAACAAAT ATATGTTCTA TGAAACCCCA AACCAAAAAA ACAAAAAAAA 
    AAGGGGCCAA AACCTTTATT CCTTTTTAAA AAAAAAAAAT TTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3125381 [Map]; Strand: c
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -642; Region: promoter
    Flanking Genome Sequence: GT24582 - 5-prime edge 
    TATCTTTTAT ATAAATCACA AATCACATAT CTAATCAAAT TCTGCCACAT 
    AGATTAATTA AAGAAGTTTT GGTAATGTTA AAAAAAATCC ACAAAAAAAA 
    GATATTCTTA AAAATAGAAA TCCTAAATTT TCTCACATAC CAAACCACGA 
    TGCCACGATC TTTGGAAGTT TAGAACCATA TCAGAAGAAA AAAAGAAAAG 
    AAAAAAAAAA AATCCCCTTC CTCCCCCCCC AAAA

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR