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GT24597

CSHL Arabidopsis genetrap mutant lines

Original: GT24597

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24597

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10738662 [Map]; Strand: w
      • AT2G25200.1 - [+] show detail - Plant protein of unknown function (DUF868)
        Distance: -1008; Region: intergenic
      • AT2G25210.1 - [+] show detail - Ribosomal protein L39 family protein
        Distance: -1193; Region: intergenic
    Flanking Genome Sequence: GT24597 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTAGTT CACGTGTCTA TAGGTTTAGC 
    ATATAGTCAG CAACTTAATT TTGTATCTTC CCTTTCTAAA GTTTATATCA 
    TACAATGTAC AACATTTCGA AAATACGAGT TTCGTGTAAA ATCGTATCGA 
    ATATAGAACT AGTTGATGAA ATCATCTACT AGTGATCTCT ATGATGTTTA 
    TTTTATATGC ATGATTTAGA GAAACTACAT CTAAAAACTG TGAGTTATCA 
    AGTGTCAATA GCTCAAAACT GGTAAAATAT TTTAGCTAAG CCTAGAGGTT 
    GCTGGTTCCA ATAACATTTG AAAGAAAATT CTATAAAATG CTTTAGTCCC 
    ATCCCGAGAG GATGTATTGG CCTAGGCCAA AACCTCTTAG TTATTCAAAA 
    GAAAAAAAGA TGTGGGTTAG TAAAGCAAAG TTTGTTGGAT CATTTACCTC 
    CCACAAGGCC ACAACTATTG GTTAATTAGT GTTATTACCT CCCACAAGGC 
    CACAACTATT GGTTAATTAG TGTTATATCA TGGACCCAAA CCGACTCTTA 
    AACCAACAAG AAACAAATAT CTTACTTATC GCAAAACTCC TTAATTTTTT 
    CATCTAATTA TCCATAACAA ATTTATTATT TTATACTATC AAACACAACA 
    TATGTAATGT TAAGTAACAT GAAAACCGAG CTTTAACAAG ATACAGTTCT 
    ATTTCTCTTT ACCATTTTTA GAATTTTGGT AGCTTTCACT GTGACTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10738765 [Map]; Strand: w
      • AT2G25200.1 - [+] show detail - Plant protein of unknown function (DUF868)
        Distance: -1111; Region: intergenic
      • AT2G25210.1 - [+] show detail - Ribosomal protein L39 family protein
        Distance: -1090; Region: intergenic
    Flanking Genome Sequence: GT24597 - 5-prime edge 
    ATGACGGCAA ACATGTGGAT TTAAGTTTGC TTCGGTTTTT TTCAGTTTGT 
    TCTAGTTTGC TACAACAAAA CTCAAAAATA TTGTTGATTT GGTGGCTACA 
    AAAATTATAA TATAAAAAAA GAAGATATGT GTTTGATTAA ATATACTAAC 
    ATAGTTTTGA TCGTATTAGG TAGAGCCATA TTTAGATAAG TTTGTGGACT 
    GCGATGAAGT TATGAAGCCA CACAATATGT ATTTTTTTTT CCCTCATGCT 
    TGATTCGTTA TTTTCTCTGT GATTTGATAT GTATGCAAAA TTATTTATTA 
    ATGGTTCCTT TTTGGGTTCC AGCTAACAAA AGAAAAGGTT TGAAAATGTC 
    CAACTACAAA TTTAATATGG AAACGTACAC CAATTCATTG CGAGATTGGT 
    GCATTACTCG CTTGCTTTTT GTTTCATCTC ACTCGACA

AT2G25200.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF868)
Computational Description
Plant protein of unknown function (DUF868); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT5G11000.1); Has 283 Blast hits to 283 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G25210.1

Model type
Protein coding
Short Description
Ribosomal protein L39 family protein
Computational Description
Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT4G31985.1); Has 908 Blast hits to 908 proteins in 288 species: Archae - 195; Bacteria - 0; Metazoa - 389; Fungi - 107; Plants - 121; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR