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GT24599

CSHL Arabidopsis genetrap mutant lines

Original: GT24599

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24599

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3731447 [Map]; Strand: c
      • AT3G11820.1 - [+] show detail - syntaxin of plants 121
        Distance: -331; Region: promoter
      • AT3G11820.2 - [+] show detail - syntaxin of plants 121
        Distance: -298; Region: promoter
      • AT3G11825.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -315; Region: promoter
    Flanking Genome Sequence: GT24599 - 5-prime edge
    GTTGTATATC TTACAAATCG AACAATCGAA GTATTACAAT TGCTTTCCGG 
    TGCTCAAAGA CTGGGCTATG GGTTTAGGCT TGGCCCTTTA ACGGAGAAAA
    GCAAGGATTT GGTGGGCTTC TTTAAATTTG GTTCGATGGA CGATTCTAAA
    TTATGTAAAT TAATTTGATA TACAGTAACA TTTTTGTTTT TTTAAATGTT
    TTCTGCTGAA GTCAATTTAT CAATAAGTGT TTCGTATGGG CTAATGTATC
    CTTTGGATGA TAAACTTAAA GTATCCAAAG CCGACAAAAT AAAATTTTAA
    AAATCATTCA AATTACGAAT GTTTTTTTCT TTCTCCAATT TATATATGAT
    TTTGGGATCT GTTACCGTAT ATACTTACAC GTACGGGACA AGGGCACACG
    GTTTCGCTTT CAACTTCACC TTCCCTTCTC CGCCATTGTT ACTTTCTCAG
    AAGCTTCCAA GTCAACCAAT AGAGACTTAC TTGTTTGACT TCTTCCTCTC
    TTACCTCATA ATCCTCCTTT TGGACTTTTC AATAAAACCG CCTACTTGAA
    TCTGTACGAC TTCTTCTCAT TTTTCCATTC TTTAAGTCTT CCCGTTGATT
    CATTCCGATC TGAAATCTCT CTCTAGATTT CTCTATTTTT CGAATTTTAA
    ATGAACGATT TGTTTTCCAG CTCATTCTCT CGCTTCCGCA GCGGAGAACC
    ATCCCCTCGC CGAGACGTTG CCGGCGGTGG CGACGGAGTT CAGATGGCGA
    ATCCCGCGGG ATCAACCGGT GGTGTGAACC TCGACAAGTT C

AT3G11820.1

Model type
Protein coding
Short Description
syntaxin of plants 121
Curator Summary
Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational Description
syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11820.2

Model type
Protein coding
Short Description
syntaxin of plants 121
Curator Summary
Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational Description
syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 122 (TAIR:AT3G52400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11825.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator Summary
Encodes a Protease inhibitor/seed storage/LTP family protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR