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GT24609

CSHL Arabidopsis genetrap mutant lines

Original: GT24609

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24609

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11588364 [Map]; Strand: w
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24609 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTCTGGAC CGCACCATTC 
    GAGAGGCGAT CACGCTAGTG TTATACAGGT AATATATACA CGCACGGTTT 
    GATCTCCGAT TCGTTAGTTA TAGTGCTTGT GTTTGACTCT GTGATTTGTT 
    TACAGGTGTT GCTTGATCCT CCTGGTGATG AACCGGTGGA AGGGAAAGGC 
    GGTGAGGGGC GCGCACTGGA TCTTGAAGGA GTAGACATTC GTTTACCAAT 
    GCTTGTTTAC GTGAGCCGCG AGAAACGGCC TGGTTATGAC CATAACAAGA 
    AGGCAGGAGC TATGAACGCT TTGGTCAGAG CCTCGGCTAT AATGTCTAAT 
    GGACCGTTCA TCTTGAACTT GGACTGTGAC CACTATGTCT ATAACTCAAG 
    AGCTTTTAGA GATGGGATCT GTTTCATGAT GGACCATGAC GGCGACCGTG 
    TTTCCTATGT TCAGTTTCCG CAGAGGTTTG AAGGAATTGA TCCATCTGAT 
    CGCTATGCTA ACAAGAATAC TGTTTTCTTC GACATTAATC TGCGAGCTCT 
    CGATGGGATC CAAGGTCCAA TGTATGTTGG GACGGGGTGT CTCTTCCGTC 
    GAACCGCACT TTACGGTTTC AACCCGCCTG ATGTTTTTGT GGTTGAGGAA 
    GAACCTTCTG GTTCCTACTG TTTCCCGCTG ATCAAGAAAC GCAGTCCTGC 
    AACCGTAGCT TCTGAACCAG AGTACTACAC TGACGAGGAG GATAGGTTTG 
    ATATTGGTTT GATTCGGAAG CAATTCGGTA GCTCGAGTAT GCTAGTGAAT 
    TCGGTAAAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3751588 [Map]; Strand: w
      • AT3G11880.1 - [+] show detail - Protein of unknown function DUF2359, transmembrane
        Distance: -72; Region: promoter
    Flanking Genome Sequence: GT24609 - 5-prime edge 
    GATTAGGAGA TTGAAAAAAA TACAAATGAA CTAAATCACC TATTGGAAAA 
    ACAACACGTG TTTTTTTTTA AACCCCGGGG GCATTTCCTA ATTTGGAAAA 
    AAAAGGGCCT CCTTTAAAAG CGGGGCAAAA AAAGGAGGGC CAAAAAACCA 
    GGGAAAAGGG GACAACTTTC AAAAAACTTA AGGGACCCAA GGAAACCTTT 
    CCCCAAACCG CCCCCACAAA CCAACCTTGG GAAGAACCTG GCGCCTCCCC 
    TGGCCAAAAC CCCGGAAACC CCAGGAGGCA AGGGGAAATC CGCCCCGGAA 
    TTTCGAACCA AAACCCAACA ATACCCAACC AAACCTTCCC TCCTTTGGGG 
    GTTGGTTAAA AAAAAACCCC TGGCCTTTGG GCCGAAGGAC CACCTTTGGA 
    AATTTGCCAA TACCCTGGAA AAAAAACTTC CCCCGGGCCA AAACCTAGGG 
    CGGGCCTGGT CCAAGGGGCC CCCTGGCCCC AACCGAAAAA AAAGAATGGA 
    GGTCCCATAA CCCCAAATCC CGGAACCGGC CACCAACCCA CCATCCAAGG 
    GGCCCGCCAA ATTTCCAATG GGGTACCCCG GGCCCTTTGA AGGGGGGCCT 
    TGAAACCGCC TCCCCCCAAT TTGGAACCCC CCCCACCAGG AAGGCCCC

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11880.1

Model type
Protein coding
Short Description
Protein of unknown function DUF2359, transmembrane
Computational Description
Protein of unknown function DUF2359, transmembrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 155 Blast hits to 134 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR