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GT24615

CSHL Arabidopsis genetrap mutant lines

Original: GT24615

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24615

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21204392 [Map]; Strand: w
      • AT1G56590.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT24615 - 3-prime edge 
    TTGTCTTTTT TTTGTTTTTT GTCAATTTGC AATCTTTTGT CATTTCATCT 
    ACAAATTAGA TTCAAAGTTC GAGACTTTAT CTTATCTATT GGGTCATCTT 
    TAGCTCTTGA TTTTAACTGT GTTAGTGTGT GTCTTATGCT TCTTTGTTGT 
    GTTTTGGATA GGCACTTCCA GTGATTGCTT CACCAACACA TTATCTATTT 
    CAAATTGTTC GTGACGGAAT TACGTTCTTA GCTTGTAGTC AAGTTGAAAT 
    GCCACCGTTG ATGGCAATCG AGGTGAATAT TTTGCTTCAT CTCACTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21204543 [Map]; Strand: w
      • AT1G56590.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT24615 - 5-prime edge 
    TCGCCTTGAG AATATATTGA TCCCAGAACC AAGCACATAT GGATCTATCA 
    ACGCGATGAC CAGTAAGCTG CTTCTCTAGC ATTACCTCTC TGTAAACACA 
    AAACCAAACA ACAGAAGATG AATTGAGTCC AACATTTCAG ACTGATTAGA 
    TCTGAGTCTG AGGACAGAAA TGGTTTGAAG ATTCACTAAC CCAGAATCGG 
    AGAGGAGAAA GATACATTGA AGCATCTCTA ACCTCGATGC GTGAATCTGC 
    AATTGCTCAG CTTTCTTCTC TTCTTCGTCG ATTTTGGGAT TTGGCTTGGA 
    AGTACAATAC TCTGACCCAG TCAGAGGCTT CGAATACTCT AATCCCGGGA 
    AAATGCAAAA AAAAAAAAAA GGGAATTTTT TTTGGGGCTT GGGGGTTTTC 
    TCCCCCCCCA AAAAAAAAAA A

AT1G56590.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Curator Summary
Involved in vesicle trafficking between the trans -Golgi network and vacuoles.
Computational Description
ZIG SUPPRESSOR 4 (ZIP4); INVOLVED IN: intracellular protein transport, gravitropism, protein targeting to vacuole; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 1984 Blast hits to 1954 proteins in 323 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 482; Plants - 226; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).
Link
InterPro Scan - TAIR