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GT24621

CSHL Arabidopsis genetrap mutant lines

Original: GT24621

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24621

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 655049 [Map]; Strand: w
      • AT4G01516.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5092; Region: intergenic
      • AT4G01520.1 - [+] show detail - NAC domain containing protein 67
        Distance: 1358; Region: intergenic
    Flanking Genome Sequence: GT24621 - 3-prime edge 
    CAATACCTCT CTGTTTGCGA CACGCCAATT CAGCTTTGAT CTGCTGAATC 
    CGAGCACCGT TGATCACAGC AAAACGTTTC TTCAGGTAGT CCCACAAATC 
    CTTTGCCACG TCTCTGTGAG AGATGGTCGA ACGTAACATC GGATCAATGG 
    TCATCTTAAT CCAAGATACA AGGAGGGCTT GAATTGTCCA CCAATCCTCC 
    AAGTCAGGTG AGCCTTCAGC CGGTTTGTTA ATCGATCCAT CGAGAAAGCC 
    AAACTTCTTC CGCGATGTCA ATGCCGTCTT CATGCCGCAG GCCCATTCAT 
    CGTAGTTAGA TCCCTTCAAA AGAGGATGAG AGATCACCGC TCCGGGATTG 
    TCAGCCGAGG TCAAGTCATA AGGTGAGATG GTTCTTCTCA CCTCCACAGT 
    TGCATTAGCA CCAGTCTCTG TCGCCATTGA TTCTTCACGA GTTCAATTAG 
    AAAATTTCAG AAAATATAGA TTCAAGCTCT GATACCATAA AGAGAGAGTC 
    AGAGGCTGAG AATTTCTGTG TATTAAGAAA TAGTTCGCGA GCGTACATAT 
    ATAGCTAACT CTAAACAAGA ATCTGAGATC TAGGTACAAT CTAACTAGTT 
    ACAACAATCT TTGCCTTTGT TACGGAGTTG ATCGCAACCT TCGAATATTT 
    GCAGTATCTG TGGAATATGC TGAATTTGAG TAGACCAACT TGAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12617045 [Map]; Strand: w
      • AT5G33382.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT24621 - 5-prime edge 
    GGGATAGTCT CGCAAGCTAT CGTCCGATCA GAACTTGCAA GTGTGGGTTG 
    TGTACTTGTG ATCTTGCTAC GGCACAAGAG ACAGATCGTG AAGAAGACAA 
    GGTACATCAG TTTTTGTGTG GACTTGATGA ACAATATCGG GCGGTTCGCT 
    CAAGCCTTGT TGCTCGGGTT CCTGTGCAGC CTCTAGAGGA GGTCTATAAT 
    ATTGTGAGAC AAGAGGAAGA TCTTCATCTC ACTCGACGAA AANANNNACC 
    TGANTGACGT CGTTTGCTGT TCACACCAAA CCACGTTACC GTGTCGATGA 
    CAAAGAGAAA GGAGCGTTGT GTAAATTGTG TAACCGCATC GGACACAACG 
    CAGACACTTG CTATGCTGTG ATTGGCTATC CCGAGTGGTG GGGTGATAGA 
    CCAAAAGGTA GAACACTACA AGGCAGAGGT CGCGGTGGAG CGAGCTCGAG 
    TGGAGGAAAA TTTGCAGGCT TTGCTTCCAT GAGACCCGTT TCAAAGATTA 
    TGTCGAGGGC ATATTTTCGC TGACACAAAT ATATGCCTGA TTCTTTCTTG 
    C

AT4G01516.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01520.1

Model type
Protein coding
Short Description
NAC domain containing protein 67
Computational Description
NAC domain containing protein 67 (NAC067); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC with transmembrane motif1 (TAIR:AT4G01540.1); Has 2752 Blast hits to 2745 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G33382.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR