GT308

CSHL Arabidopsis genetrap mutant lines

Original: GT308

Phenotypes

Morphological phenotypes

Original description

  • glossy rumpled leaves
Anatomical entity
/structure development stage		 Phenotypes
vascular leaf (PO:0009025)
  • high saturation (PATO:0001229)
  • wrinkled (PATO:0001810)

Original: GT308

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT308 - 3-prime edge 
    ACGGATCGTA TCGGTTTTCG ATTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12553345 [Map]; Strand: c
      • AT2G29200.1 - [+] show detail - pumilio 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT308 - 5-prime edge 
    CCTTNNCCCT NTTTCAAAAC NGNCNGTACC CAGAGGNCNA TAATCAAATC 
    ATCGAATGGG TTTGAGTATC GCTTAATAAA GTTTTGATCT TTGGGTTTAG 
    TTCTAAAAAC AGAGAATTTC GGGGATTGTA TATATTTGAG GTATAAAGTT 
    TTGATCTTTA TGATTTTTTT TCGTAATGGT GTGAGTATAA ACTATTGAAT 
    TGATTTTGGG TTTTTTGTTG TTTAGGTGAC AATGATACCG GAACTAGGGA 
    GAANACCGAT GCATAGAGGT AACGAANATT CATCTTTTGG GGATGATTAT 
    GAGAAAGAGA TTGGAGTATT GCTTGGTGAG CANCANANAA GGCAANTANA 
    AGCTGATGAG CTTGANANAN AGCTTAACTT GTTTAGAANT GGCTCTGCTC 
    CACCGACTGT TGATGGTTCT GTTAGTGCTG CCGGAGGGCT TTTTANCGGC 
    GGAGGTGGGG CNCCTTTTTT GGAGTTTGGT GGTGTTAATA AGGGTAATGG 
    GTTTGGTGGT GATGATGAGG ANTTTAGGAA AAATCCGGCT TACTTGTCTT 
    ATTACTATGC TAATATGAAN TTGAATCCGA GGTTGCCCCC ACCTTTGATG 
    TCTAGGGAGG ATTTGAGGGT TGCTCNNAAG CTTAAAGGGA NTAATAATNT 
    NTTAGGTGGT GTTGGGGATA NGAAAAAANT TAATGATAAT CNATCTTTGT 
    TCCCCAATGC CCCCCGGGTT TTGAANGTGA AAAT

AT2G29200.1

Model type
Protein coding
Short Description
pumilio 1
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink).
Link
InterPro Scan - TAIR