GT3199

CSHL Arabidopsis genetrap mutant lines

Original: GT3199

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT3199

Determination of insertion point(s)

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT3199 - 3-prime edge
```
CCTCCATCGT TTCACCTATC TGGTCGGCGA ACAT
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 28555217 [Map]; Strand: c
- AT1G76100.1 - [+] show detail - plastocyanin 1
  Distance: -449; Region: promoter
- AT1G76110.1 - [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
  Distance: 0; Region: exon6 (3UTR)

AGGTGATTTA TTTAAAACTG CAAGTCGTTT TGTTGTAGGT CGTTTCTCTC 
TTTTAAGATT GGACGCCTCG CCGTTTCTTT TATTTTCTAG CTTATTGTAG 
TTGTCCATGC TTGCTTAACT AGGCTCAGTG AGAGGCTAGA CTTGCCAAAC 
TTGAAGAGTC TTTATTTATT TAAGAATTTT AGATGTTCTA ATGTATTAAT 
CCTTTTTCGT AAACCTTTCC TGTTAAACAA GAGGTTTATG TTGCATGTTA 
AAAAAGAGGT TTAGGTTATA TTAGCAATTT AGCATTCGAT TCGTTGGTTA 
GTAACTAAGT GATATAAATA CCACAAGAAC AAGAAATACT AATGAAAACT 
TGGAATGTTC AAAGTCTCCT TATCTACTTA TGCAACGTTA GACAAAGCTA 
TCAAACAATG CCACGTCACC TCACAAAACA TCTAGGGTAA CCAATCACAT 
GCAGA

AT1G76100.1

Model type: Protein coding
Short Description: plastocyanin 1
Curator Summary: One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description: plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76110.1

Model type: Protein coding
Short Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Computational Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G04880.1); Has 3338 Blast hits to 2805 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 276; Plants - 321; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link: InterPro Scan - TAIR