GT3394

CSHL Arabidopsis genetrap mutant lines

Original: GT3394

Phenotypes

Morphological phenotypes

Original description

  • stunted plants with delayed flowering
Anatomical entity
/structure development stage		 Phenotypes
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)

Original: GT3394

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16071451 [Map]; Strand: c
      • AT1G42705.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT3394 - 3-prime edge 
    TAGGTAGGAC TCGACCTATT GATAATAGTA AAGGGAAGAG AAAAGGCGAT 
    ATCGCTGATG ATGGTGATAA TGCTAACCCT TGTAAGCCAA AGAAGAAGTT 
    GCAAACAAGG TCTTGGGTTT GGGATCACTT CACGAGAAAA GATGGTGATG 
    ATGACCAATG CAAATGTCAT TACTGCAAGA GGTTCTTTGG ATGTTCAACA 
    AAATCAGGGA CTTCAAACTT GAAGAAACAT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4482542 [Map]; Strand: c
      • AT5G13900.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -653; Region: promoter
      • AT5G13910.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT3394 - 3-prime edge 
    GAAACCGGAG GCATTCTGCT GAACATTGGA CTATGTACGT ACTCAGACAA 
    ATGGTCGTCA CCGGTCCATG TCCACTGTGG TTGGCTGTAA CACGAATTCG 
    ACTAGTCGCT CGGGAGACGA GGCAGCTCAT TACTACTGTC CATTAGAATA 
    CCAATAAGAA TTCGAAGATT GAGAGCCACC AAACATGTAA CTGTCCACTT 
    GATCACAATG AGGCTGAAGC ATTGGCGAAT CATTGGATGA GTATTGGTTA 
    AACATCATCA TGTAATCGAC AGGATCATTG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4482501 [Map]; Strand: c
      • AT5G13900.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -612; Region: promoter
      • AT5G13910.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT3394 - 3-prime edge 
    ATCCCTACCC AAAGTAGTTG AAACCTTGAG GGAAAGAGTC AGAAACCGGA 
    GGCATTCTGC TGAACATTGG ACTATGTACG TACTCAGACG AGTAGTCGTC 
    ACCGGTCCAG GTCCACTGTG GTTGGCTATA ACACGAATTC GACAAGTCGC 
    TCGGGAGAGG AGGCAGCTCA TTACTACTGT CATTAGAATA GCAATAAGAA 
    TTCGAAGATT GAGAGCCACC AAACATGTAA CTGTCCACTT GATCACAATG 
    AGGCTGAAGC ATTGGCGAGT CAGTGGATGA GTATTGGTTA AACATCATCA 
    TGTAATCGAC AGGATCATTG CTAGGAGGAG CAGGAGGAGG TGGAGGAGGA 
    GGAGGATCGT CNGGAGAAAC AATGGAGGTG ACGGATGAGG AAGGAGGCAT 
    GTCTGAGTAA ACAAAGTTGG TTCTGGCACG TGTGCCACGC ATGGACCGAG 
    CAGCTCTATC GTAGGCCAAG GCAGCTTCTT CCGCCGTATC GAAAGTGCCA 
    AGCCAGTGAC GCTCCTTCGT AGTTGGGTCT CTAATCTCAG CTGCGTATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4482282 [Map]; Strand: c
      • AT5G13900.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -393; Region: promoter
    Flanking Genome Sequence: GT3394 - 5-prime edge 
    TGCCTATGTG ATCAAAGTGA CTGTTTGTCA TTAGTTTTTC AATAACAAGT 
    TATCATTTGT ATCTTGATTA ATGAAAACAA GAAACTGCTC TTGTGTTACT 
    TTCAAATACA TATTTAATAT ATATGGGCCT TGGACATCAA AAGCCCATTA 
    TTCGATGGGT TATTAGTTGG CATGATATAC TTTGTATAGC CCAAACCTCT 
    GTGCGTTTTT CTTATGGTTG AACGAGAACT ATATTCTAGG ATGGAATAAC 
    AATTTGTTAT TCTACTTCTG TGGCTTTGGC ATTTGCTT

AT1G42705.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 2.3e-66 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G13900.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13910.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.
Computational Description
LEAFY PETIOLE (LEP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G28160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR