GT3714

CSHL Arabidopsis genetrap mutant lines

Original: GT3714

Phenotypes

Morphological phenotypes

Original description

  • early arrest; seedling lethal
  • tiny plants. 3/11 normal plants. 5/11 small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT3714

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16248085 [Map]; Strand: w
      • AT2G38910.1 - [+] show detail - calcium-dependent protein kinase 20
        Distance: -602; Region: promoter
    Flanking Genome Sequence: GT3714 - 3-prime edge 
    TCCACATACG TCACTAGTTT CACAATTGGA CTTTGTATAA ACAAAATTTC 
    TCCTTATTGT ATATCTCCTT CCATCAACAT ATTTATTAAC TTAATCCATC 
    GCAGTGAATT CCCTACAATA TCACCACTCA ACGTTATATA TATGATCAAA 
    AAAACTAATT AATTGTTAAC AATTAAAAGA CAATAGAAAA TTGTTTTTGA 
    TAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25589325 [Map]; Strand: w
      • AT1G68270.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT3714 - 5-prime edge 
    ATGCATTTCT ATGTTCTCAT AGATCTCCGG GGCACTCACG TGGCTCATAC 
    ACACATTGGT GCCCCCGCGC GCTGCTGTTG CCCATGTAAA CGTCCATCCA 
    TTGCAATGAA ACATAGGCAA AAATCCAAAG GTAGACATGG CAGGTACTCA 
    TTTCCCAACC AATAATTACA CCTAACGAGG TCAAATATGC TCCTCGATGG 
    CTAATCACCA CACCTTTTGG GTCAGCCGTG GTACCTGACG TGTAGTTTAG 
    GGAGATGGGA TCTTGCTCAT TTTGTATACG GAACATATTT TCAACCAACG 
    GAGACGTATG CTCTCCCATC TGAATGAGAC TCTCGTAGTC TAACTCCTCG 
    GATGAAACCC TTTTAGCGGA ATTGTACTCG TCAATAAATA TGACCAGCAA 
    GTTTAGTTGT AAGTCGTCAC ATGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25589314 [Map]; Strand: w
      • AT1G68270.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT3714 - 5-prime edge 
    TGTGTCACAC TATGCATTTC TATGTTCTCA TAGATCTCCG GGGCACTCAC 
    GTGGCTCATA CACACATTGG TGCCCCCGCG CGCTGCTGTT GCCCATGTAA 
    ACGTCCATCC ATTGCAATGA AACATAGGCA AAAATCCAAA GGTAGACAGG 
    GCAGGTACTC ATTTCCCAAC CAATAATTAC ACCTAACGAG GTCAAATATG 
    CTCCTCGATG GCTAATCACC ACACCTTTTG GGTCAGCCGT GGTACCTGAC 
    GTGTAGTTTA GGGAGATGGG ATCTTGCTCA TTTTGTATAC GGAACATATT 
    TTCAACCAAC GGAGACGTAG GCTCTCCCAT CTGAATGAGA CTCTCGTAGT 
    CTAACTCCTC GGATGAAACC CTTTTAGCGG AATTGTACT

AT1G68270.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 12 (TAIR:AT1G65890.1); Has 75696 Blast hits to 66693 proteins in 3446 species: Archae - 1253; Bacteria - 49932; Metazoa - 3177; Fungi - 3138; Plants - 2055; Viruses - 1; Other Eukaryotes - 16140 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38910.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 20
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 20 (CPK20); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium dependent protein kinase 1 (TAIR:AT5G04870.1); Has 134628 Blast hits to 127183 proteins in 3957 species: Archae - 159; Bacteria - 14419; Metazoa - 50012; Fungi - 17942; Plants - 28393; Viruses - 493; Other Eukaryotes - 23210 (source: NCBI BLink).
Link
InterPro Scan - TAIR