GT4125

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal
stunted plants

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)
sporophyte vegetative stage (PO:0007134)	abnormal (PATO:0000460)

Original: GT4125

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20714925 [Map]; Strand: w
  - AT1G55480.1 - [+] show detail - protein containing PDZ domain, a K-box domain, and a TPR region
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: GT4125 - 3-prime edge
```
TAGCAACAAG CAACATTGTA ACTTGCAACT GATGCTTCTT CTGGTGTTGG 
TTTAGAACCT AACACCGACT CAAACCTCTC CAATGCTTCC TCATACTTAC 
CATTCCTATA TCAAATTACA CACATG
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 20714938 [Map]; Strand: w
- AT1G55480.1 - [+] show detail - protein containing PDZ domain, a K-box domain, and a TPR region
  Distance: 0; Region: exon5 (CDS)

CCGTTTTCAT CCCTAGCAAC AAGCAACATT GTAACTTGCA ACTGATGCTT 
CTTCTGGTGT TGGTTTAGAA CCTAACACCG ACTCAAACCT CTCCAATGCT 
TCCTCATACT TACCATTCCT ATATCAAATT ACACACATGT CAATGCTCAC 
TTTCCGGTTT CCATAAACCC CTTTGGTATA CTCACTAAGC ATTTACTTGG 
AAAATTGCAG CCCTTCACGA AGATCCTTCT CCCGCCGAGC TTTCTGTTCT 
TTCTTCTTCA AATACGCTTG CATCTACAAT TATCACAACA AAAACAAAGC 
TCACTCACAA GCCAAAGTTC ATTACTTTTG ATGTCACATA ATCAAAAC

3 prime edge [+] show sequence

Chromosome: 1; Position: 20714943 [Map]; Strand: w
- AT1G55480.1 - [+] show detail - protein containing PDZ domain, a K-box domain, and a TPR region
  Distance: 0; Region: exon5 (CDS)

ACCGACCGTT TTCATCCCTA GCAACAAGCA ACATTGTAAC TTACAACTGA 
TGCTTCTTCT GGTGTTGGTT TAGAACCTAA CACCGACTCA AACCTCTCCA 
ATACTTCCTC ATACTTACCA TTCCTATATC AAATTACACA CATGTCAATG 
CTCACTTTCC GGTATCCAAA AACCCCTATT GGTATAATCA CTAAGTATTT 
ACTAGGAAAA TTACATCCCT TCACTAAGAT CCTACTCCCG TTGAGCTTTC 
TGTTCTTTCT TCTTCAAATA GTTTTGTATC TACAATTATA AAAACAAAAA 
CAAAGCTCAC TCACAAACCA AAGTTCATCA CTTTTGATGT CACATAATCT 
AAACTTTTGA ACACACCTGA ATCTCTCTCA ATCTACTGCT AATGTAACCG 
GCATTTCTCT CAACTCTGAT GATCTCCTTC TCTGTTAACT CCCAATATCT 
TCAGCCTTAC CTGCNAGAGA AGAAGACACA ACACATTTTA AACATAACCA 
AACCCAATAA TGAGTTTTGC

5 prime edge [+] show sequence

Chromosome: 1; Position: 20715037 [Map]; Strand: w
- AT1G55480.1 - [+] show detail - protein containing PDZ domain, a K-box domain, and a TPR region
  Distance: 0; Region: intron5 (CDS)

TGCTTGTTGC TACTCAAAGC TTAATCAGGT AAAAAGCTTT TGAATCTTTT 
CAGATATTGC ATTTTGACTT GCAGTGTTGA TAGAGTTCTT TTGATAGGTT 
CAAGCTGGTC TCTCGGCTCT GGAAGAAGCA TTGAAGTCAG GATATGAAGA 
TTTTAAGGTA AGTCCAAGGA GTTGTAATGT TTCAATTGAG ACAGAGAGAA 
GGATGGACTT GTTTGTTGAA GCTGTGTTAT TTGTTTTGTT TGCAGAGAAT 
CAGAAGTGAT CCAGATCTGG AAACTCTCAG GAAGTCGAAG GATTTCGATC 
CACTTCTGAA GCAATTCGAC GAATCTTTCA TCAATGAGAG TGCCATTAAC 
GCCATCAAAT CCTTGTTTGG CTTTAACAAG AAATAGTTCA CCTAAAGTTT 
GTGTCTTTTG ATGTGATCTG TTCATAGCTT CTCTTCTCTT CTTGGCTCTA 
TACATACTTG TGAGGAATTT TATTTGATCA TAAATGTGTT CTTTTTTTCT 
TAAGAAATTC TTTTAACCAT TTCATTCAGT TTACGTATAC CATTTCATAT 
GAAGTGATAA TAAATCTTCA AATCTTTGGA TCA

AT1G55480.1

Model type: Protein coding
Short Description: protein containing PDZ domain, a K-box domain, and a TPR region
Curator Summary: Encodes a member of a novel plant protein family containing a PDZ, a K-box, and a TPR motif. mRNA but not protein levels decrease after wounding. ZKT is phosphorylated at Thr and Ser residues after wounding.
Computational Description: protein containing PDZ domain, a K-box domain, and a TPR region (ZKT); FUNCTIONS IN: binding; INVOLVED IN: response to wounding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), PDZ/DHR/GLGF (InterPro:IPR001478), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: rubredoxin family protein (TAIR:AT5G17170.2); Has 316 Blast hits to 316 proteins in 83 species: Archae - 2; Bacteria - 103; Metazoa - 8; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link: InterPro Scan - TAIR