GT4135

CSHL Arabidopsis genetrap mutant lines

Original: GT4135

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT4135

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 42205 [Map]; Strand: w
      • AT4G00114.1 - [+] show detail
        Distance: -822; Region: promoter
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT4135 - 3-prime edge 
    CCGTTACCGA CCGTTCTCAT CCCTAATTAT CTGAATCTGA TGAGTGTAGG 
    TTATATATGG ATTAGCAAAA AAGAAAACAA CCATTATTAC GCACCTACAT 
    TAAAAATCAT CCACCAAAGA AGAAACCATC CTCAAGAGGG TTCCCATATT 
    GGAGAATAAT GAAAAATTTA AGAAGAAAAG AGTCGAGATT TCGACGGACA 
    AGCATTCTGA TTATTACAAA CATATTTTAG AGAAATTTAA AAAGAAAATT 
    AAACTAAAAA TTAAAAAGAA GCAAACTGAG ATAACTCTCT GTCTCAATGG 
    AACGCCGGCC AGAAGTGATC ATCGTGATTT TGGTTACCAT CTTGATAAGG 
    TCAATCGAGG AGTGTATCCG TTTCAAACAC CAAACT

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR