GT4138

CSHL Arabidopsis genetrap mutant lines

Original: GT4138

Phenotypes

Morphological phenotypes

Original description

  • stunted plants
Anatomical entity
/structure development stage		 Phenotypes
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT4138

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2389647 [Map]; Strand: w
      • AT3G07480.1 - [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT4138 - 3-prime edge 
    TACTCTCTCA GATTTTAGAT CTCATCAAGA TCTAACCCTT ATATCACTCA 
    CGGATCATCA TCGATCTTTC AGATCTGTGT TCCATTTTTC CCTGCCGATA 
    GCGTCTTGGT TTCTCTAAAT CCGATGATTT GTTTTCGTCT CTAGTTTTTT 
    TTTTTTTTTA ACCCTACATT TATGAGGTCC TCAAGGAACA TTTCTTACGG 
    TATACCCCTT TGTTTAAATT CAAGAACAGG GGGGACCTTA CCTTCTTTCT 
    TTTGGGTTAA CACTACTTGC GCAACCAAAA CGCGAGTGCT TGTTCAAGAT 
    ACGGGATCTA GAGCTACGCT TCAGCACATA CTCCTCATCG TAAGTACGCG 
    GCGGGAGCTT CTCGAGCCAT TCCTCTGCGA TCTGAACCTC GCACTCCGCT 
    GAGCAAGCCT CGATGTCATC CAATCTATGC GATGCTGGAT CTATCAGACC 
    AGTGTGAGTG AGCGCACGAA GGAGAGTCTG GCCAGAGAGT CCAATGATGT 
    CCTGCTTGTA TCCATCGGGA TCGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 81555 [Map]; Strand: c
      • AT2G01090.2 - [+] show detail - Ubiquinol-cytochrome C reductase hinge protein
        Distance: 0; Region: intron4 (3UTR)
      • AT2G01100.2 - [+] show detail - unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archa...
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01100.1 - [+] show detail - unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archa...
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01100.3 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT4138 - 3-prime edge 
    GACCGTTTTC ATCCCTACTC TCTCAGATTT TAGATCTCAT CAAGATCTAA 
    CCCTTATATC ACTCACGGAT CATCATCGAT CTTTCAGATC TGTGTTCCAT 
    TTTTCCCTGC CGATAGCGTC TTGGTTTCTC TAAATCCGTT GATTTGTTTT 
    CGTCTCTAGT TTTTTTTTTT TTTTTCCTTT TTAAATTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9020505 [Map]; Strand: w
      • AT1G26090.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT4138 - 5-prime edge 
    TCCTTTTATC ACAAGCGGCT CTAGTGGAGC TCCGGCCAAT CTGATCTTTT 
    GAATTTTACA CCAAAAAAAA TAATAATGGT GTCTTTGGTC AATTCTTCTC 
    TAACATGCTC AAGCCTTACT CTGAATCTCC TTCCCATTCT GCGTACGGAA 
    ACACCTTCAC TCTCCAGGAA GCGTCGAGCA GCTTATGTGG CGGCTACATC 
    TTCTAGAGAT GTTAACGATA CCGCCGCTGA TTCTTCTCAG AAACTCACCA 
    AATTCGTCAC CTTTCTCGGA AAAGGCGGCT CCGGCAAGAC CACCGCCGCT 
    GTTTTCGCCG CTCAGGTAAA GGAAAAAACA CATTTTTCTG ATTTCTTTCT 
    CATTAATCAA TCTTGACTCA AGTCCTGAAT TTTCCTCGGC ATTGAATTCT 
    GAATCCTATA ATGTTTAGAA TTGAGTGTTG TATTGATCTC ATCTCTGCTT 
    AGATTGATGT TTCTTTTTGC TGTCTTCATA GATTGAATGT GTGGTTGCTA 
    ACTATTTGTC TTTAAAAATG GCTATGTACG TTAGCATTAC GCATTGGCTG 
    GGCTCAGTAC ATGTTTGGTG ATACATAATC AAGACCCTTC TGCTGAATTC 
    CTCCTTGGAA GCAAGATTGG GACTTCTCCT ACCTTGATCA ACGACAATCT 
    CTCT

AT1G26090.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1161 Blast hits to 1150 proteins in 416 species: Archae - 94; Bacteria - 665; Metazoa - 113; Fungi - 156; Plants - 46; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01090.2

Model type
Protein coding
Short Description
Ubiquinol-cytochrome C reductase hinge protein
Computational Description
Ubiquinol-cytochrome C reductase hinge protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase hinge protein (TAIR:AT1G15120.2).
Link
InterPro Scan - TAIR

AT2G01100.1

Model type
Protein coding
Computational Description
unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archae - 0; Bacteria - 1003; Metazoa - 10257; Fungi - 1826; Plants - 1570; Viruses - 56; Other Eukaryotes - 4708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01100.2

Model type
Protein coding
Computational Description
unknown protein; Has 19420 Blast hits to 10641 proteins in 779 species: Archae - 0; Bacteria - 1003; Metazoa - 10257; Fungi - 1826; Plants - 1570; Viruses - 56; Other Eukaryotes - 4708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01100.3

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07480.1

Model type
Protein coding
Short Description
2Fe-2S ferredoxin-like superfamily protein
Computational Description
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1263 Blast hits to 1263 proteins in 213 species: Archae - 0; Bacteria - 293; Metazoa - 132; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
Link
InterPro Scan - TAIR