GT4440

CSHL Arabidopsis genetrap mutant lines

Original: GT4440

Phenotypes

Morphological phenotypes

Original description

  • small, sickly plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT4440

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8087270 [Map]; Strand: w
      • AT2G18650.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT4440 - 3-prime edge 
    CGACCGTTCT ACAGTAAATG GAAGGAGGTG TTTGTCAATG GGATCATATG 
    AGTATATTAT GGATCAAGAA GCTACACTTA AG

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT4440 - 5-prime edge 
    ACTTTACCTT CTCCTTACGC ATAGAAGTCT CGACCGTAGA CTCAAATGTC 
    GTTTTACTAT CCCCCC

AT2G18650.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
maternal effect embryo arrest 16 (MEE16); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G30400.1); Has 9180 Blast hits to 9159 proteins in 289 species: Archae - 0; Bacteria - 0; Metazoa - 2153; Fungi - 782; Plants - 4907; Viruses - 48; Other Eukaryotes - 1290 (source: NCBI BLink).
Link
InterPro Scan - TAIR