GT4800

CSHL Arabidopsis genetrap mutant lines

Original: GT4800

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • embryo lethal
  • early arrest seedlings
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT4800

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23057638 [Map]; Strand: c
      • AT5G56980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT4800 - 3-prime edge
    TGCTGGTAAT GTTTTCTTGA ACCTGACCCG AGTCGAGAGG TTACGACGAT 
    TGTACCGATC ATAACATTAA TAAGGAGGAA AAGAGTCCTC GGACTGAAAA
    AGCTCGCGAC CGTCGTTAGT AACTCCATTT TTGGGTTGTG T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23057622 [Map]; Strand: c
      • AT5G56980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT4800 - 3-prime edge
    CGTTTTCATC CCTAGATGCT GGTAATGTTT TCTTGAACCT GACCCGAGTC 
    GAGAGGTTAC GACGATTGTA CCGATCATAA GATTAAGAAG GAGGAAAAGA
    GTCGTCGGAG TGAAAAAGCT CGCGACCGTC GTTAGTAACT CCATTTTTGG
    GTTGTGTTTT ATGTTGGTTT TGTCGGAAGG AGAAATGAGC AAAAGGAGTA
    TATTTATATT TGGATTTTGT TTTTTGTTTT TTTTGAGGTT TGCGTTTATT
    TATTTATTTT ACTTCTTTTG TAAACTTTTT GACTGTTATT TATTTGGTCA
    TTTGAAAATG GTTTTTTGTT TTGATTATGG AAACGTCGAA AGTATTAGAG
    TTAATGTGTT CACATGAGAC GCACGTGAAT TTCTCTTTTC TTCTATTCAT
    ATTTCGTCCA TATTATTAAA TTTAAGGAAG TGATATTTTT TAGTATTATT
    CTGTGTGGAG TATAAGTTTT CAAGAACAGC TAATTATTAA TCAGACTAAT
    TTTATTATAG GTAACAAAC

AT5G56980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR