GT484

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

stunted plants

Anatomical entity /structure development stage	Phenotypes
sporophyte vegetative stage (PO:0007134)	abnormal (PATO:0000460)

Original: GT484

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 10831394 [Map]; Strand: w
  - AT4G19985.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G19990.2 - [+] show detail - FAR1-related sequence 1
    Distance: -909; Region: promoter
Flanking Genome Sequence: GT484 - 3-prime edge
```
GTGATGTTAT TGTCTCTGTG TTTTGCTAAC CACAACACGT GGATGTAGAT 
GATGCGGTTT TGTATTCAGA AAAAAAAAGT TTATCTTCTT CTTTGTATAC 
TACAGAATTT GGGAGACACA ATATGGATGA TAGTTTTCTG GGAGACTTGT 
TTCAGAATGC GGTGCCTCTC ACTCCTTCCA ATGGACAGCT TGTTGGATTC 
GGTCGTGCTT ATCCTGATTA TGGCTTGACC GCT
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 10831677 [Map]; Strand: w
- AT4G19985.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT4G19990.2 - [+] show detail - FAR1-related sequence 1
  Distance: -626; Region: promoter

TCGATCGACG CAATGCCGAT GCAGCATTAT CAGATTTTCT CCTCCTTGCC 
CACCTCAACT CCATAGATAC AAGAGAAGAC TTACCATGTC AACCCACCAG 
ACCCATTTCC TTGGACAATC TTGGTGACAC TAGAATGCAG CATCTAATCA 
CGAAACATGA CATGATAATC GAAACTCACA GTACCAATTA CCAAACCTTA 
CAGAAATACT ATCACAGAGT TATTTCTTGA AGAGAAACTA TGAACTAGAC 
AAAATACACA TTCTAATCAA AGATTCAATT TTTACGTTTA CAATGAACAA 
AAGATTGCAA ATTTCTCAGA AATCGAGCTC AATCAACATT CCAAGACTCA 
AAATTTCATG AGAATACTAA CTACCATAAG CGTAAATCTC TATGAATTAT 
CTGATTAATG ATAAAAATAT GAAACCTGGG GAAAGTTCTG TCAAATTTCT 
CGAAGAAAAT CAACCATTTT TGCTTCTATA CTCACGATGT TTCCATCAGC 
AGAGGTGAAG AAGAAGAACA CCANAAAAAT GTGTGGCTCA AGATTTGCTC 
GTGCAGGAAA AATTATCCGG TTCTCGACGA AATGAATCCG GTTATCAAAA 
ATAT

AT4G19985.1

Model type: Protein coding
Short Description: Acyl-CoA N-acyltransferases (NAT) superfamily protein
Computational Description: Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G19990.2

Model type: Protein coding
Short Description: FAR1-related sequence 1
Computational Description: FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1).
Link: InterPro Scan - TAIR