GT4959

CSHL Arabidopsis genetrap mutant lines

Original: GT4959

Phenotypes

Morphological phenotypes

Original description

  • curled cauline leaves
Anatomical entity
/structure development stage		 Phenotypes
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)

Original: GT4959

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19549556 [Map]; Strand: w
      • AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT4959 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTAGT TGCTATTCCT AGCCCTGACC 
    AGAGAACAAT TTTCCAGCGA AGAGTATTAT ATCTTGAGCA GGTTAAACTT 
    TTTTAGATTT GTTGCTCTTT ATGAAACTAT ATTATTATCC AATTGATTTT 
    CTTCTTCT

AT2G47680.1

Model type
Protein coding
Short Description
zinc finger (CCCH type) helicase family protein
Computational Description
zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
Link
InterPro Scan - TAIR