GT4981

CSHL Arabidopsis genetrap mutant lines

Original: GT4981

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • tiny, green seedlings
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • decreased size (PATO:0000587)
  • green (PATO:0000320)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT4981

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 39926 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT4981 - 5-prime edge 
    AAGATGAAGA TCAAACCAAC GAAGACGAGA GACCAAAAGG CGAGCTTGGC 
    GACGGAGGAT TGCCACCGCG TACGGTGGAA GTAGGGCTTG AACTTGCCAG 
    GCGTCGAAGG AATATCATCA AGATGCGACA TTTGCTTCAT ATTTACCTCT 
    ACAGAGAGAA TCTTCTTCTT CTTCTTCTTT GAGGTTTCTT TTTTTTCTTG 
    GATTGGTTTT GGTTTTGGTT TGTTTGGTGA GAGCGTTTAT AGGCTCTCCG 
    AATAATAAGG GAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7078101 [Map]; Strand: c
      • AT4G11750.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT4981 - 5-prime edge 
    CCTCCCNTTT NCCTTNCTGG CCCCCTTGCC GTACTGCAAT CGGTANGGTC 
    CNTGTGGNNC ACCAACGGTG CNTACTCGTC NANGTTCTTG TTCATGGACT 
    GTCNGTCTCA CNCCTTGCAT GAANTNCCAA GAATGGATAA GACCANAAAG 
    AAACCCTTCA TGATTAGGGT TCTTGATGGG AAAATATATG TAATAGAAGG 
    CTGCAAAAAT CCCGATTACT CGAATTTGAT CGAGCGTTTC AATCTCAAAA 
    CCTTAACATG GGAGCATGTG CCAAGCCCTA GCGCGGAGAT ACGTGGTAGT 
    TATGTAACAG GAAGTTTANT CTATGACGGA AAGCTTTACC TGTTTGGGGA 
    TAAACGTGTG GTTTACAANC CCAAAGAAAA TAAATGGGAT GTGGTAGGAT 
    TGGAAATGCC TTTACGTTGG ACTCCCTCTT ATATATCTTG NGTANTANAT 
    AACGTAATCT ACTCTTACGG GAAGATCTAC AGTGCTCATG TGGTNCCCCA 
    CAGAGGAAAG ATTGTGGANA TATTTGAANG GTTTGAAAAA ACTTCCCANA 
    CTACCAAAGG ATTGTNCTTG TGTTAAAACT GTTGGGTTAT AATGGAAGNG 
    GTTGTGGTNT TNGTNGGAAA ANAATGTGGG TGGTGGANAC CCTCNNAAAG 
    AANAAGATTT NGTGTNCNNA AAATTTGCGC NTTGAAAAGG GCNCCTTTGC 
    CCCACCCNAA TTTTATNGGN GAAANGAAAT ANAANTNGGT GTTGATGTTT 
    NTTCCCTTAN CCNCTGCCCC GGGGTTCCAT GNTTCCTTTA AAATGGAAAT 
    TTCCTGCCGG GCTTGGTTTT CCTGNTTNTT GAATTNAAAA TTAAAANTCC 
    CTTTTAACAA CCCCT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11750.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G11770.1); Has 1432 Blast hits to 1334 proteins in 96 species: Archae - 0; Bacteria - 28; Metazoa - 371; Fungi - 0; Plants - 1017; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR