GT5006

CSHL Arabidopsis genetrap mutant lines

Original: GT5006

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT5006

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14328458 [Map]; Strand: w
      • AT2G33860.1 - [+] show detail - Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-re...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5006 - 3-prime edge 
    CCTAAGGTCC TGTGTCTGTG GTGTCTCCTA ATTCTGCTGG TGGATGGGTT 
    TGTTTGGACC TGTGGTATGC TTGTGCTGGA CCCCTTATCT CTCTACCAAA 
    AATAGGAAGC CTTGTGTGGT ATTTCCCACA GGGACATTTG GAACAAGCCC 
    CCGATTTCTC CGCCGCGATT TACGGGCTCC CTCCTCACGT GTTCTGTCGT 
    ATTCTCGATG TTAAGCTTCA CGTATGTAAC TAACTCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 106559 [Map]; Strand: c
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -343; Region: promoter
    Flanking Genome Sequence: GT5006 - 5-prime edge 
    TCAATTCTGA AAATATTGAA GCACAACTGG AAACCGTTTC TTTTGTGCAC 
    TCAAGATATT AAAATGGTTC TCTGTATCTG AAAATATTGG AACAGAACTG 
    AAAACTGTGT TTTAGTCAAG CTAGCGTATT GTTATAATGT GTTTTCTTGA 
    GCAAATGATG ATACTAGCAA TTCAAATTTC ATCT

AT2G01175.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33860.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator Summary
ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.
Computational Description
ETTIN (ETT); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, vegetative phase change, regulation of transcription, DNA-dependent, abaxial cell fate specification, auxin metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 4 (TAIR:AT5G60450.1); Has 1211 Blast hits to 1200 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1202; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR