GT5062

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

delayed flowering; stunted and had sick-looking, glossy leaves.

Anatomical entity /structure development stage	Phenotypes
whole plant flowering stage (PO:0007016)	late (PATO:0000693)

Original: GT5062

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 19958050 [Map]; Strand: w
- AT3G53900.1 - [+] show detail - uracil phosphoribosyltransferase
  Distance: 0; Region: exon4 (CDS)
- AT3G53900.2 - [+] show detail - uracil phosphoribosyltransferase
  Distance: 0; Region: exon5 (CDS)

TTACCGACCG TTTTCATCTG CCAATGGGTC CTGCTTCTGT TGAATTCATT 
GATCCTAGAG AGCCTATTGC GGTTTGTTTA TCCCTCAAAC TCTTCCTGTC 
TATATTTTCT TTTCGACCTT ACATGTAAGC GTTTCTAATT CTTGGTTTTG 
TCTCTGTGTA GGTTGTTCCG ATATTAAGAG CTGGTCTTGC TCTTGCGGAA 
CACGCATCCT CAGTTTTACC TGCTAATAAA ATTTATCATT TAGGTTAGTA 
ATCTAGCTAT ATATCATCTC TTGCCTGAAC TTCGGATGTC AAAAATGAAA 
ACTTTTATCA AATAGCTTAT TCATCTCTCT C

5 prime edge [+] show sequence

Chromosome: 3; Position: 19958159 [Map]; Strand: w
- AT3G53900.1 - [+] show detail - uracil phosphoribosyltransferase
  Distance: 0; Region: intron3 (CDS)
- AT3G53900.2 - [+] show detail - uracil phosphoribosyltransferase
  Distance: 0; Region: intron4 (CDS)

TTATTTCACC CACAACAGTA GGCTTAACCG CATAGAGCAA AAAACAAAAA 
ACAATAAGCA AAATACGGGT AGGAAGAATT CAAGAGTAAT AGAGATGTGA 
AATTCTACGC ACCAGCCACT CTCGTGATGC TTCATACATG AGTAATCTCC 
CTAGTTCAGC TATTGCATGC CCTAGATAAT TAAAAAAACT CAAGCTTTAA 
GGATCAACAC AGACTTGATA CTAGTAGCAA ACCTAAAAAA ACTCATATTC 
AAACGCAATG TAGCAGATAA CACCAATCTA AGAGCTAAAG ATTGTCCAAC 
GAAT

AT3G53900.1

Model type: Protein coding
Short Description: uracil phosphoribosyltransferase
Curator Summary: Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage. Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.
Computational Description: uracil phosphoribosyltransferase (UPP); FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, developmental process, nucleoside metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: uridine kinase-like 2 (TAIR:AT3G27190.1); Has 6281 Blast hits to 6281 proteins in 2387 species: Archae - 194; Bacteria - 4412; Metazoa - 236; Fungi - 342; Plants - 200; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G53900.2

Model type: Protein coding
Short Description: uracil phosphoribosyltransferase
Curator Summary: Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage. Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.
Computational Description: uracil phosphoribosyltransferase (UPP); FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, developmental process, nucleoside metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: uridine kinase-like 5 (TAIR:AT3G27440.1); Has 6282 Blast hits to 6282 proteins in 2386 species: Archae - 194; Bacteria - 4411; Metazoa - 238; Fungi - 342; Plants - 200; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
Link: InterPro Scan - TAIR