GT5087

CSHL Arabidopsis genetrap mutant lines

Original: GT5087

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT5087

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4806779 [Map]; Strand: c
      • AT3G14385.1 - [+] show detail - MIR169F; miRNA
        Distance: -929; Region: promoter
      • AT3G14390.1 - [+] show detail - Pyridoxal-dependent decarboxylase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5087 - 3-prime edge 
    TTCTTCACCT TATTTTCGGG TATCAAAGCC ACAAAACCCT GAGAATGGCG 
    GCAGCTACTC AATTTCTCTC CCAACCTT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT5087 - 3-prime edge 
    CAGCTACTCA ATTTCTCTCC CAACCTTCTT CTCTC

AT3G14385.1

Model type
miRNA
Short Description
MIR169F; miRNA
Curator Summary
Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG
Link
InterPro Scan - TAIR

AT3G14390.1

Model type
Protein coding
Short Description
Pyridoxal-dependent decarboxylase family protein
Computational Description
Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink).
Link
InterPro Scan - TAIR