GT5203

CSHL Arabidopsis genetrap mutant lines

Original: GT5203

Phenotypes

Morphological phenotypes

Original description

  • dead or tiny plants
  • short, bushy plants. very delayed flowering. no mature siliques when peers were nearly senescent.
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)

Original: GT5203

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25869356 [Map]; Strand: c
      • AT5G64710.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon1 (5UTR)
      • AT5G64710.2 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -489; Region: promoter
    Flanking Genome Sequence: GT5203 - 3-prime edge 
    TTTCATCCCT AATTACAATC ACGCATGAAA CATCTCCTTG CTCTACTCAT 
    TCCTTGAGAT AATCATGCAA TTCGGATCTT CCAAAACCCT CTTCTTCCGC 
    GTCGCCGGTT TCTCTTCCAC CTCCGTCTTC AAGCCGCGTC GCGCGATCTC 
    TGTTCCGGTC GCGAATTTCT CTTCATCTCT CTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25869334 [Map]; Strand: c
      • AT5G64710.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon1 (5UTR)
      • AT5G64710.2 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -511; Region: promoter
    Flanking Genome Sequence: GT5203 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTACAA TCACGCATGA 
    AACATCTCCT TGCTCTACTC ATTCCTTGAG ATAATCATGC AATTCGGATC 
    TTCCAAAACC CTCTTCTTCC GCGTCGCCGG TTTCTCTTCC ACCTCCGTCT 
    TCAAGCCGCG TCGCGCGATC TCTGTTCCGG TCGCGAATTT CTCTTCA

AT5G64710.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G09840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64710.2

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G09840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR