GT5219

CSHL Arabidopsis genetrap mutant lines

Original: GT5219

Phenotypes

Morphological phenotypes

Original description

  • small, green seedlings
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seedling (PO:0008037)
  • green (PATO:0000320)

Original: GT5219

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15357339 [Map]; Strand: w
      • AT2G36640.1 - [+] show detail - embryonic cell protein 63
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT5219 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA TTCTTCAAGT TTAAAGGTGA 
    CTGTGAAACT CTTTGTTTTG TTTTTTGATG TGATTAAATC ATGCAGGGGA 
    AATGAAGCGA AAGGGATTAT TTTTGGTGCA TTAGGGAATG TAACGGAAGC 
    AATAAACACC AAACTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3455806 [Map]; Strand: w
      • AT5G10946.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT5219 - 5-prime edge 
    CTAGATAAAA CGAAGCATTA TAAACTAACT ACAACCAGTT CTTGAACGCT 
    TTATGCCTAT TTTACAAAAC TCAGACATCC CTTATTCGAT CATTTGACTA 
    TTTCAAAATT CCATTATTCA ATTATTCATC TAACATATTA GTCAAGAATC 
    AAGACCCAAC TAGAATTTAG TGGTAGAATA ACTTTCTATG CTACAGACTA 
    ATCATTTTCT TCACCACAAC AATCGGAGAT AAGCTATACT TAGTCATGCG 
    TTCAAACCAC ATAACATAAG CTTCAATCGC TTCCAATTAT CTCTAACTCT 
    AGACTCTAAG TGATTATCCC TCTCTGATTG CACACATCTA TAAAAGACCT 
    TAGAATCATA CATATCCACA TAACTTACAT AGGAGCTACA ATGCCCAAAA 
    TTTTGAGCAC ATCAACTCCA A

AT2G36640.1

Model type
Protein coding
Short Description
embryonic cell protein 63
Curator Summary
Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.
Computational Description
embryonic cell protein 63 (ECP63); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G53040.1); Has 29213 Blast hits to 16834 proteins in 2229 species: Archae - 326; Bacteria - 11175; Metazoa - 5508; Fungi - 2029; Plants - 3175; Viruses - 194; Other Eukaryotes - 6806 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10946.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR