GT5222

CSHL Arabidopsis genetrap mutant lines

Original: GT5222

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT5222

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 781344 [Map]; Strand: c
      • AT4G01810.1 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -989; Region: promoter
      • AT4G01820.1 - [+] show detail - P-glycoprotein 3
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT5222 - 3-prime edge 
    GGCCTNCTGA ATCCGACCGT TTTCATNGCC CCNTCCNAGN CCCATNTGTT 
    NTCTCANCCA TTTTAGTTGC AGCTTCTTGA GCTCAACTCT GTCTANAGTT 
    ATATGACCCG AATCCGGATC ATAAAACCTT TGTAACAGAG AAATCACTGT 
    AGATTTACCT GATCCACTCT CTCCGACCAA AGCAACCGTC TGAAATAAGC 
    AAGAGAATTA AAGGACTAAA CATGTATATC AAAATCAGAA TTGGTAAGTT 
    TCATGTCTCC TCACTTTATT TGTGTCAATA TGTAAGGGAA ATATCAAGAT 
    AACCAAAAAA ACAAATGATA GTAGTCTTTT GGACATGTTA CCTGTCCAGC 
    ACGAATGGCG AAACATAGGT CACGAAAGAT TTGAACGTCA GGTCTAGTTT 
    GGTAGGTGAA GCTTATGTGA CAAAGCTCGA TATCTCCTTT AACATTCTCT 
    AACACGAGTC CCGATTCNTC TCTCTCGACG A

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT5222 - 3-prime edge 
    GGGGGGGGGG GGGGAGGGGG GGGGGGGGGG GGGGGGGGGG GGGGGGGGGG 
    GGGGGGGGGG GGGGGGGGGG GGGGGGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11446221 [Map]; Strand: w
      • AT1G31880.1 - [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) doma...
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: GT5222 - 5-prime edge 
    GACNACTNTC CGACNNAAAA NTNANTGTCT GTCNAACNNC TACNCTANTC 
    TTCTCNGCGA CCNTTGACNG TCTACTTANA TANCTATACT CNNANNCNNC 
    NCCNCTCGTG CCGGCTTCCT AAAATAGACC AAAGCCTTCA AGAGGAAAAT 
    AAAGCAGAAG CTAGCTATCT AGTATCTCAA TAATCTGCAG ATCATATCGC 
    GGCATNTCTC ATATNTNGAA ACNTANNGGT GAGTGAGTAN TAAACAAAAC 
    CCACTAATCA NAATTTNATN TTTTGGATTG TAATGATTAA GAAAAAAAGA 
    AGAAGTCGTT TTCTGAGGTG AGAATAATAA TGGGGTTTGT ATCAGTTTGC 
    CTTTGCTTTT GATATCAAAA CAGAGTTTTT TCGTGATTCG TGATTGTTTT 
    TGCGATTTTA TCTTTTTTAC TTTGGATATA GTTTTAGTTT TCATCTCNCT 
    CGAANAAA

AT1G31880.1

Model type
Protein coding
Short Description
DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator Summary
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
Computational Description
BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01810.1

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT2G21630.1); Has 8290 Blast hits to 5679 proteins in 621 species: Archae - 16; Bacteria - 1021; Metazoa - 2159; Fungi - 1153; Plants - 2353; Viruses - 447; Other Eukaryotes - 1141 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01820.1

Model type
Protein coding
Short Description
P-glycoprotein 3
Curator Summary
member of MDR subfamily
Computational Description
P-glycoprotein 3 (PGP3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 5 (TAIR:AT4G01830.1); Has 830190 Blast hits to 386538 proteins in 4151 species: Archae - 14649; Bacteria - 648558; Metazoa - 17709; Fungi - 12207; Plants - 9512; Viruses - 34; Other Eukaryotes - 127521 (source: NCBI BLink).
Link
InterPro Scan - TAIR