GT5337

CSHL Arabidopsis genetrap mutant lines

Original: GT5337

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • small, green seedlings
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
seedling (PO:0008037)
  • green (PATO:0000320)

Original: GT5337

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4738003 [Map]; Strand: c
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT5337 - 3-prime edge 
    GGTATCCATT GTTACCTCCA GCATCGAACG AGTTTGTTAA CCCAAACTGA 
    TTGTTGTACA TCTGAGGCTT CTCTTCCATG AAACTCATAT CACCAAAAGA 
    GTTGTCAAAG GAGTTGTTGC AGTACTGCTG ACTCAGATGT GTTGGCTGCT 
    GAACCAAAGT TACGCTTTTG TTTGGTTTAG CCACTGATTT CTGAAGATTA 
    TTAGTCTTAG CACTAGGACG TTTCTGGGAT ACGACGCTAG GGTTCATCTC 
    TCTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4737847 [Map]; Strand: c
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT5337 - 5-prime edge 
    TTCGACTGTT CTGAGTTCGG GTGGAGTGAT CACGGCCCTA AAACACCCGA 
    GATCTCTTCA ATGCTTGTCA ATAACAACGA AGCATCATTT GTTGAAGAAA 
    CCAATGCAGC CAAAAAGCTC AAACCAAACT CTGATGAGTC AGACGATCTG 
    ATGGCATACC TTGACAACGC CTTGTGGGAC ACCCCACTAA AAGTGGAAGC 
    CATGCTTGG

AT3G14230.1

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.2

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5845 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6193; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.3

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR