GT542

CSHL Arabidopsis genetrap mutant lines

Original: GT542

Phenotypes

Morphological phenotypes

Original description

  • dead or tiny plants; 6/13 small plants; 4 normal plants
  • short siliques
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
fruit (PO:0009001)
  • decreased length (PATO:0000574)

Original: GT542

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5768510 [Map]; Strand: c
      • AT2G13810.1 - [+] show detail - AGD2-like defense response protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT542 - 3-prime edge 
    GGAATTANTA NTTCGTCACC GACCGTTTTC ATCCCTAAGT CTAATGTTCT 
    TTAGTTCGGC CTCACCTTTA TGCTCTTCTC CATCAAAAAT TCCCAAGGGC 
    TAGGTACTTG TTTACAATTA TAATGCAAGA CATGGATTCA AATATTTTAC 
    GCTATTAAGT AGTCTTTCTC TTATAATCGG CTTCTTGATA CACTTAACTT 
    CACTCTTTCN TCTCACTCGA CGAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5768424 [Map]; Strand: c
      • AT2G13810.1 - [+] show detail - AGD2-like defense response protein 1
        Distance: -22; Region: promoter
    Flanking Genome Sequence: GT542 - 5-prime edge 
    CTCTNANTAA CAAGTGGCAA GTTATGANNG CTTCGAANAN ATNTGTAGAC 
    AATAATGATA CATTCTGATC TGATATGTGC GTATGTTTAN ACTCCAAGTA 
    AGTACCAAGA ACCGCTATTA AAATGTGTAT GGATATGTCA CCATCANAGT 
    GGATANAGTG CAGAAATTTC TGAAGCAGCC AATCCATGCA CGGCNTAGTG 
    AGTCAGATAT ATTCACACCA TGTCTTCTTA TNGTCCATTN AATGTGGGAC 
    CNATATATGA GCATNTTANN TNTTCAAANA GATTANANTT TGTACGTACT 
    TAAGNATCAT TNGAAAGAAT TATACNATGT GACATNTGAA ATCTCTACTA 
    ATCNATGCCN TCGGTTAATT GNGGTTGGAA AACCCAATAT CNAANACTCC 
    TTGCGTTCCA TNTCNAGANT CTATAATTAT GTATAAAAGA CAAAACAAAC 
    ATNATAGTAA ATGTCATTTA NCTGAATNTG TTNGAAACGG ATATNTTNAA 
    NGAAANANTG ACGCNACAAC NACTTTCCTT CGGATGAACT NNANGCTNCC 
    CTTCTATTTG TTGAATNCNA TGTTANTGTG ACCTCTTGGG A

AT2G13810.1

Model type
Protein coding
Short Description
AGD2-like defense response protein 1
Computational Description
AGD2-like defense response protein 1 (ALD1); FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; LOCATED IN: chloroplast; EXPRESSED IN: sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G33680.1); Has 32741 Blast hits to 32741 proteins in 2900 species: Archae - 975; Bacteria - 23252; Metazoa - 372; Fungi - 435; Plants - 591; Viruses - 0; Other Eukaryotes - 7116 (source: NCBI BLink).
Link
InterPro Scan - TAIR