GT5567

CSHL Arabidopsis genetrap mutant lines

Original: GT5567

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
  • small, green seedlings; low germination
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
0 seed germination stage (PO:0007057)
  • decreased frequency (PATO:0000381)
seedling (PO:0008037)
  • green (PATO:0000320)

Original: GT5567

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3427275 [Map]; Strand: w
      • AT1G10417.1 - [+] show detail - unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Arch...
        Distance: 0; Region: exon1 (CDS)
      • AT1G10419.1 - [+] show detail
        Distance: -756; Region: promoter
    Flanking Genome Sequence: GT5567 - 3-prime edge
    ACCGTTACCG ACCGTTTTCA TCCCTATTCC ACTTTACTAC CGGCGTTTTT 
    GCAGGAAAGG GAGCGATCAG TCACAGATCA CATTACTCTT GCGAATCAGG
    TTCTTCGATC AATGTTACTG TTCATAACTC TCGTTTTTGT TTCGTTTCTG
    ATTCGTAAAT GGTGATCATT TTGTTTGGTG CTTTCGCTAC AGAAACAGAA
    GCAAACGGAG GAGGACTGCA TCTGGAAAGT GCAGGAGCTT CAAACTGATT
    TAGCTTCTTC TAGAGAAACA CAGGAGGCTC TCGAGAGAAA GGTTTGGAAG
    ATTCTTCTCT TCTGCGAATC TATTTCACTT GGAGTTAGTG AAAGTTTCTA
    ATTGATTTTG CAGGTGAGTT ATCTTCAGAA CGACTATAGT TTGCTGGAAA
    ACAAGCAGAG TGAATTGAAG AGGACTATCC AAAATTTGCT TCAATCGCGA
    GAAAGTTTCT TAAATGCTTA CCAGGTGCTT TTCTCATAAA ATCACAATCC
    TGTCAAAATC TTATACTATA TCTAAGGGAT AAAAATAGCT TAGAGAATCA
    TCTCCATGAT ATGGAACTGT GT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19482812 [Map]; Strand: w
      • AT5G48070.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 20
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT5567 - 5-prime edge
    GCAACTTTTT ATATTATTTT AATTAATCCC TTGCATATAA TATAATCTCA 
    TATGTTTTGA GGCTATAAGC TCATCTACCA ACAATTTTTT TATTCCTTTT
    CCCT

AT1G10417.1

Model type
Protein coding
Curator Summary
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.
Computational Description
unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10419.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT1G10419
Link
InterPro Scan - TAIR

AT5G48070.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 20
Curator Summary
putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.
Computational Description
xyloglucan endotransglucosylase/hydrolase 20 (XTH20); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 18 (TAIR:AT4G30280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR