GT5570

CSHL Arabidopsis genetrap mutant lines

Original: GT5570

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
  • small, green seedlings; low germination
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
0 seed germination stage (PO:0007057)
  • decreased frequency (PATO:0000381)
seedling (PO:0008037)
  • green (PATO:0000320)

Original: GT5570

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17954519 [Map]; Strand: w
      • AT4G38340.1 - [+] show detail - Plant regulator RWP-RK family protein
        Distance: -191; Region: promoter
    Flanking Genome Sequence: GT5570 - 5-prime edge 
    ATACCATTAT GACATGTTCC TTTTGGAATC TTTCATGGAA TCACGGCTTG 
    AGGAGTGATT ATATATGTAT TTTTTAAAAG TATTATCGTG AAGCCCTAGC 
    TTTCGTTGCC TTTATAACCT ATAGTAGGAA ATAAAAAATG AATATATAGT 
    AAGTACATCG ACTCGAGTGC TTCTGATACA ATCAATATAA ACCACCCAAC 
    CCTGGGAGAT TCAGAACTTT GGATTTTTGA TTATATAAAA TTTGAATAGT 
    TAATTAGTAT TTATGGTGGG ACCTTTTAAA AAGATTCTGC ACGCTCACAA 
    CCAAAGATTC CCTCCATCTT CTTCTTCTTC TCTGGATCCA GTTGTTGATG 
    ATTCTTCAAG AAAACAAACA AGGATCATCC TCTCTTACTT GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17954588 [Map]; Strand: w
      • AT4G38340.1 - [+] show detail - Plant regulator RWP-RK family protein
        Distance: -122; Region: promoter
    Flanking Genome Sequence: GT5570 - 5-prime edge 
    TTTTTTAAAA GTATTATCGT GAAGCCCTAG CTTTCGTTGC CTTTATAACC 
    TATAGTAGGA AATAAAAAAT GAATATATAG TAAGTACATC GACTCGAGTG 
    CTTCTGATAC AATCAATATA AACCACCCAA CTCTGGGAGA TTCAGAACTT 
    TGGATTTTTG ATTATATAAA ATTTGAATAG AAAATAAGTA TTTATGGCGG 
    GACCTTTTAA AAAGATTCTG CACGCTCACA ACCAAAGATT CCCTGCATCT 
    TCTTGTTCTT CTCTGGATCC AGTTGTTGAT GATTCTTCAA GAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17954499 [Map]; Strand: w
      • AT4G38340.1 - [+] show detail - Plant regulator RWP-RK family protein
        Distance: -211; Region: promoter
    Flanking Genome Sequence: GT5570 - 5-prime edge 
    TCCCGAGGGG ATGCATGCTT ATACCATTAT GACATGTTCC TTTTGGAATC 
    TTTCATGGAA TCACCCTTGA TTAGTGATTA TATATGTATT TTTTAAAAGT 
    ATTATCGTGA AGCCCTAGCT TTCGTTGCCT TTATAACCTA TAGTAGGAAA 
    TAAAAAATGA ATATATATTA AGTACATCGA CTCGAGTGCT TCTGATACAA 
    TCAATATAAA CCACCCAACC CTCAGAAATT CAGAACTTTG GATTTTTGAT 
    TATATAAAAT TTGAATAGTT AATTAGTATT TATGGTGGGA CCTTTTAAAA 
    AGATTCTGCA CGCTCACAAC CAAAAATTCC CTCCATCTTC TTCTTCTTCT 
    CTGGATCCAG TTGTTGATGA TTCTTCTAGA AAACAAACAA GGATCATCCT 
    CTCTTACTTG CTTCATCTCT CTC

AT4G38340.1

Model type
Protein coding
Short Description
Plant regulator RWP-RK family protein
Computational Description
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 720 Blast hits to 573 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 7; Plants - 646; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR