GT5580

CSHL Arabidopsis genetrap mutant lines

Original: GT5580

Phenotypes

Morphological phenotypes

Original description

  • tiny or dead plants
  • small, green seedlings; low germination
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)
0 seed germination stage (PO:0007057)
  • decreased frequency (PATO:0000381)
seedling (PO:0008037)
  • green (PATO:0000320)

Original: GT5580

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19437787 [Map]; Strand: w
      • AT2G47360.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -13; Region: promoter
    Flanking Genome Sequence: GT5580 - 3-prime edge 
    GTTACCGACC GTTTTCATCT CTTAATCTAA GGTGGAGGAA TTGTTGTGAA 
    GTTAAGAAAC ATAAAAGAAA GTTATTTATA TGTTTTATTA TAAGAGAAAA 
    TGAAAGTTTA TGTTTGAAGG AAAGATGAAG GAGTGGGTGC CATGTCTATA 
    GTTTCAAGTT AGGTATGATG AAAAAGAATC ATACATGTTA ACAGAATTAA 
    ATACATTTTG TTAGAGGAAA TTATAGTATT AAACAACACA CGCATAACAA 
    GGTTACTTGA TTATTAAAAC AGATAGAAGA GTGATGAGAA ATCATTGCCT 
    TTATTCTTTC CAAGTAATTT AAGTTTCATT TGTCCCTAAT ACAAATTGTC 
    AACTGCAAAA ACAATTATGG AGAAGGAACG ATAATGTTAA GAAATCATAA 
    GTGGAGAGAC GCAAACACAC AGCTCAGAAA CGACGACGTA CTGGTGGTAA 
    TCCATGATGA TGCACTTGCT TGCTTCCAAT AATAGAGCAT TTCGTATCAT 
    GTCTTAGAAA ACAAATGTAT CCCTTTTATT ATTTAAATCT A

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19437774 [Map]; Strand: w
      • AT2G47360.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -26; Region: promoter
    Flanking Genome Sequence: GT5580 - 3-prime edge 
    TTCATCTCTT AATCTAAGGT GGAGGAATTG TTGTGAAGTT AAGAAACATA 
    AAAGAAAGTT ATTTATATGT TTTATTATAA GAGAAAATGA AGGTTTATGT 
    TTGAAGGAAA GATGAAGGAG TGGGTGCCAT GTCTATAGTT TCAAGTTAGG 
    TATGATAAAC AAGAATCATG CATGTGTACA GAATTAAATA CATTTTGTTA 
    TAGGAAATTA TAGTATTAAA CAACACACGC ATTACAAGGT TACTTGATTA 
    TTAAAACAGA TAGAACAGTG ATGAGAAATC ATTGCCTTTA TTCTTTCCAA 
    GTAATTTAAG TTTCATTTGT CCCTAATACA AATTGTCAAC TGCAAAAACA 
    ATTATGGAGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11578075 [Map]; Strand: c
      • AT4G21810.1 - [+] show detail - DERLIN-2.1
        Distance: -880; Region: promoter
      • AT4G21820.1 - [+] show detail - binding;calmodulin binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT5580 - 5-prime edge 
    TAGAATACTT AGAACCAGTC AAGGAAGAGT CAATCTCTGA ACGTTTTTTC 
    TCACCACACC AACCTAAATT CCTCAACCTT TTAGGGCTTC TCCACATTGT 
    ATCAACTCCA ACAGATTTAC TATTTCCTAA AGCCTCACCA CTATCTCTCT 
    TCCCCTTACC TAAATTCCCA ACACCAGACT CGTTCTCGAA CGGATCGCAA 
    CCGCAATTTT CCGGGTTTTC AAACAAGAAA TTGAGCCACA CAGTATGTGA 
    TTTAGCAAGA GATCTAAGAT TCTTCTCTCT CG

AT2G47360.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21810.1

Model type
Protein coding
Short Description
DERLIN-2.1
Computational Description
DERLIN-2.1 (DER2.1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21820.1

Model type
Protein coding
Short Description
binding;calmodulin binding
Computational Description
binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
Link
InterPro Scan - TAIR