GT5598

CSHL Arabidopsis genetrap mutant lines

Original: GT5598

Phenotypes

Morphological phenotypes

Original description

  • small, green seedlings
  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • green (PATO:0000320)
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
  • decreased height (PATO:0000569)

Original: GT5598

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3747561 [Map]; Strand: c
      • AT3G11870.1 - [+] show detail - Endoribonuclease/protein kinase IRE1-like
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT5598 - 3-prime edge 
    GTTTTCATCC CTACTAGCCT CCCGAAGGAA AAAAAGCCTC TTTTCGGAGT 
    CCCAAAACAG AGGATGGAGA AGCACCTGAG TTGCACTAGG ACTACCAAAG 
    AAAAAAAGCA AGCTCAAATC AGAAAATGTT TTTGTTAAAC GAAGTCTAAA 
    TTAGTAGGCA AGAGGAGGAT GAGGTTACCG TAAATCAGGT TTGTAGTTAA 
    GCAACTGCTC GATGAGGTTT ATGGCTTCAA GGTTCGTTAC GAGCGAAAGG 
    TTGGTTTTAT TGTTGGTCTT GATGTTAGTA TCACGCTCAC TAGGACTTCC 
    AAAAGGATGT GTTCCCATTA CGGCGTAATG CAGGAGACAG CCAAAGTTAA 
    ACATGTCAGC TGGAAAATCC TCCTTTTTTT TCTTATCTTT GTTAAGCTGC 
    TCCGGTGCTT GCCATCCTGA ACTACCAGAA CCTGCAAATT TTACGCATTC 
    ATTTAGGCAC ATGAATTCAG CTTGAATTTT CTTCACCAAC CTAGGCCATT 
    A

AT3G11870.1

Model type
Protein coding
Short Description
Endoribonuclease/protein kinase IRE1-like
Computational Description
Endoribonuclease/protein kinase IRE1-like; FUNCTIONS IN: endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, mRNA processing; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Endoribonuclease/protein kinase IRE1-like (TAIR:AT2G17520.1); Has 43296 Blast hits to 42939 proteins in 2046 species: Archae - 74; Bacteria - 4886; Metazoa - 17147; Fungi - 4251; Plants - 8096; Viruses - 78; Other Eukaryotes - 8764 (source: NCBI BLink).
Link
InterPro Scan - TAIR