GT56

CSHL Arabidopsis genetrap mutant lines

Original: GT56

Phenotypes

Morphological phenotypes

Original description

  • small hypocotyl (vasculature mutant?)
Anatomical entity
/structure development stage
Phenotypes
hypocotyl (PO:0020100)
  • decreased length (PATO:0000574)

Original: GT56

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11744578 [Map]; Strand: c
      • AT4G22190.1 - [+] show detail - unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0...
        Distance: -1260; Region: intergenic
      • AT4G22200.1 - [+] show detail - potassium transport 2/3
        Distance: 1935; Region: intergenic
    Flanking Genome Sequence: GT56 - 3-prime edge
    AANNANANAN GTACCGACCG TTTTCATCCC AAGCCACCGA CGTACACGCA 
    TGCTATACAT ATTCGATATT CCNAGTCCTA TACTTATGTA CAAGCCTTTG
    TTTTGTTAGT ATCAAGTTTC ACTCGTTTGT GCCAAATAAA AACGACAAAA
    TCAATGTATT GACTTTTTGA TGATTAATTT ACGAAATAGT CAAATTGTTT
    CATAAAGTGG TGGTTTTATT AGGAAAAATT AATCACAATA GGTTGGCGGA
    ACATAGAAAA TGAGTGATCA ACAATGAGAA AATCTATAAA TACAGTACAC
    TTTATTATTT AATTCTATTT AATATCTCCA CCATTTTTAA AATTGAGTGT
    CTAACGAATG AATCTTATCA TTAATGTTTG ATATTTTTCT CTACATTCAC
    GAATAATTTC ATTCTTTTGT TCTGCTATGT TTTTTTGTCT TGCCAAAATT
    CCTTACCAAG TTATGTTATG TTTACGACAC CAATACACTT AATAGACAAA
    TGTTGGCTGT CAAAACAAAA AAAAACAAAA AACAAATNTA TTCCCAAANT
    ACATTATTAT TANCGATAAA ANACANCCAA AAGGGGTAAA CGGGCCAAAA
    ATNAGGCCCA TTANCANAAG GAAACAAATA NTTNAAAAAA TGAAACGTGA
    TTTTAATAGG ACCTACACNT ATTAAACGCT TTTTNATCGT ATTGTTTAAC
    TTTTTCTGCT GTACATTACG GGTTCNCACC AGTTGACTGG CTGTGATTTT
    AACTAGTTCA ANAAATTTTT AAAAAAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11744606 [Map]; Strand: c
      • AT4G22190.1 - [+] show detail - unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0...
        Distance: -1288; Region: intergenic
      • AT4G22200.1 - [+] show detail - potassium transport 2/3
        Distance: 1907; Region: intergenic
    Flanking Genome Sequence: GT56 - 3-prime edge
    CCAAGCCACC GANNTACACG CATGCTATAC ATATTCGATA TTCCTAGTCC 
    TATACTTATG TACAAGCCTT TGTTTTGTTA GTATCAAGTT TCACTCGTTT
    GTGCCAAATA AAAACGACAA AATCAATGTA TTGACTTTTT GATGATTAAT
    TTACGAAATA GTCAAATTGT TTCATAAAGT GGTGGTTTTA TTAGGAAAAA
    TTAATCACAA TAGGTTGGCG GAACATAGAA AATGAGTGAT CAACAATGAG
    AAAATCTATA AATACAGTAC ACTTTATTAT TTAATTCTAT TTAATATCTC
    CACCATTTTT AAAATTGAGT GTCTAACGAA TGAATCTTAT CATTAATGTT
    TGATATTTTT CTCTACATTC ACNAATAATT TCATTCTTTT GTTCTGCTAT
    GTTTTTTTGT CTTGCCAAAA TTCCTTACCA AGTTATGTTA TGTTTACGAC
    ACCAATACAC TTAATAGACA AATGTTGGCT GTCAAAACAA AAAAAACCAA
    AAACAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11744489 [Map]; Strand: c
      • AT4G22190.1 - [+] show detail - unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0...
        Distance: -1171; Region: intergenic
      • AT4G22200.1 - [+] show detail - potassium transport 2/3
        Distance: 2024; Region: intergenic
    Flanking Genome Sequence: GT56 - 5-prime edge
    AATTNTNCCN CAGTACTACN ACTACACCCA ACTCTTAAGT ATTCATTTTT 
    CATTAGTTAT GAAGTAAAAT CCCGAAGTAT GTGCTATTCT TATTTTCCAT
    GAAATGCGGT CGAGGAATGT GGTTCGTTCG TCTAATTATT ATAGTCAAAT
    TAAAGTAATG ATTGAAAAAT CACATGATGG ATAAATAATT AAACTTTTGA
    AGTTTTGAAA GTTGATATCA CCAACATCAC AATGACATCA TATTTGAATA
    AAACGTAAAT AATTTTGTGT GTTTTANAAG ACAAANTAAG AGGAAAATGT
    ANAATGGAAA TGACTTTTGG GTTCAGAGGG TAATGATAAT TGCACAAGAT
    TTTAAACATG AAAAAGGGTC AACTTCGATT TAGAGATTTT ATTCTTGTAA
    ACCATAAAGT TTAACTTACT TTCGCTATTT TCTCGGGAAA CATTCACCAA
    GAAATCGAAA AATTATCAAG TTCCGAGGGG TCCAGGAAAT AAGGTTGAGT
    GGAATTTATA TTCTTCATCT CATTTTTATA CCTCCCACCT ATATGTAATT
    GTTTAAATAA ACNGTGTTAA GAGAAGCGAA AACAATNCGA ATGATTAACT
    TGACAAAANA ACCTACTNAG GANTTTGTTG TANAATTGTT ACAAATGAAT
    CTCCCTTTGG TNGACNCNNN GAACACNAGA ATCTTNCCTA TAAATTTTCA
    AATCACCTAT TATTANCANT AATTTTGCTA NAAAAATTCT TCCNTGGAAT
    TTGGTATTTN GAATAANGAT TTGGCATTTA CCTCCTAAAA CCTANAAATT
    TGGTTAGCTT GTCCCCTNNC AAATTTTTNA AACCAATCCC NTATTTNNTT
    TGGCCCNAAA AACCNATTTT TGGTTGAAGG AAAATTCANC AATTNGGGTG
    GGTTCNAAAA TNGNGNAGGA AAACTTAAAC CCCCNGGGTG TTGNAAAAAN
    NAATTCCNTA ATNGGTAAAT CTAACCCCNN ATTAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11744450 [Map]; Strand: c
      • AT4G22190.1 - [+] show detail - unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0...
        Distance: -1132; Region: intergenic
      • AT4G22200.1 - [+] show detail - potassium transport 2/3
        Distance: 2063; Region: intergenic
    Flanking Genome Sequence: GT56 - 5-prime edge
    TATTCATTTT TCATTAGTTA TGAAGTAAAA TCCCGAAGTA TGTGCTATTC 
    TTATTTTCCA TGAAATGCGG TCGAGGAATG TGGTTCGTTC GTCTAATTAT
    TATAGTCAAA TTAAAGTAAT GATTGAAAAA TCACATGATG GATAAATAAT
    TAAACTTTTG AAGTTTTGAA AGTTGATATC ACCAACATCA CAATGACATC
    ATATTTGAAT AAAACGTAAA TAATTTTGTG TGTTTTAGAA GACAAAATAA
    GAGGAAAATG TNAAATGGAA ATGACTTTTG GGTTCAGAGG GTAATGATAA
    TTGCAGAAGA TTTTAAACAT GAAAAAGGGT CAACTTCNAT TTAGAGATTT
    TATTCTTGTA AACCATAAAG TTTAACTTAC TTTCGCTATT TTCTCGGGAA
    ACATTCACCA AGAAATCGAA AAATTATCAA GTTCCGAGGG GTCCAGGAAT
    AAGGTTGAAT GGAATTTATA TTCTTCATCT

AT4G22190.1

Model type
Protein coding
Computational Description
unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22200.1

Model type
Protein coding
Short Description
potassium transport 2/3
Curator Summary
Encodes AKT2, a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. AKT2 belongs to the Shaker family K+ channels which include the following groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
potassium transport 2/3 (KT2/3); FUNCTIONS IN: inward rectifier potassium channel activity, protein binding, cyclic nucleotide binding; INVOLVED IN: regulation of membrane potential, response to abscisic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: K+ transporter 1 (TAIR:AT2G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR